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16s-itgdb

An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.

am_2024

Analaysis for the batch correction paper

autoqii2

AutoQii2 Pipeline can be used to analyzing 16S rRNA amplicon based datasets. Author: Abhishek Khatri Co-Author: Vishal Acharya

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bacterial_variant_calling

A pipeline for variant calling on bacterial genomes created with Nextflow and singularity / docker

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatica

Pipelines e scripts para análises em Bioinformática

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

bioinformatics-workbook

Bioinformatics Workbook repository

boss-miniprojects

btm

Blood Transcription Modules for interpreting blood transcriptomics data

build-your-own-x

Master programming by recreating your favorite technologies from scratch.

cs-video-courses

List of Computer Science courses with video lectures.

deepsomatic

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

ecobiotec-ngs-tutorial

16S amplicon NGS - Hands-on

epicasscassvanet4dev

EpiCass Workshop

esoup

A wrapper around NCBI's Entrez utilities

figureonelab

Hone computational biology skills by re-enacting Figure 1 of modern biology papers

gemma

Genome-wide Efficient Mixed Model Association

getting-started-in-technical-writing

A compilation of useful resources for anyone who wants to get started in technical writing.

getting-started-with-open-source

github-slideshow

A robot powered training repository :robot:

gsc

VCF compression tool

hiv-drives

ilri-africa-cdc-training

A suite of pathogen genomics tutorials for the ILRI Genomics platform training programs

introductions

An Introductory repo for maintainers, collaborators and the bioinformatics community at large

introductorygit

kilifi_bioinfo_meta