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EMSL Computing's Projects

ccsz-demo icon ccsz-demo

Python and R scripts with examples demonstrating the conversion of IM-MS raw data to CCS/z space.

corems icon corems

CoreMS is a comprehensive mass spectrometry software framework

enviroms icon enviroms

EnviroMS is a software for natural organic matter data processing and annotation

grip-tomo icon grip-tomo

docs: https://grip-tomo.readthedocs.io/en/latest/

iontoolpack icon iontoolpack

A software tool for omics-agnostic automated quality control of mass spectrometry data.

isoforma-lib icon isoforma-lib

R package for the relative quantitation of proteoforms with MS2 fragmentation patterns

mapdataaccess icon mapdataaccess

R package for passing files and Rdata objects to and from minio (https://hub.docker.com/r/minio/minio/), with additional support for the multi-omics analysis portal

peakdecoder icon peakdecoder

A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.

pspecter icon pspecter

The PSpecteR users manual can be accessed via the weblink below

pspecterlib icon pspecterlib

Proteomics R package for matching peptide fragments for both digested and intact proteomics

tmsig icon tmsig

Tools to prepare and analyze a priori molecular signatures, such as gene sets.

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