Comments (1)
If you have already added cell type annotation as in metadata column of your Seurat object, you can use the following code:
Extract cell type annotation
meta_dat<-as.data.frame([email protected]$cell_type)
Add barcodes as 1st column to this table
meta_dat<-cbind(rownames([email protected]),meta_dat)
rownames(meta_dat)<-NULL
Save table in current directory (or change the code to add it to desired output directory)
write.table(x = meta_dat,
file = 'project1_cell_type_annotation.txt'),
sep = '\t', row.names = F, col.names = F, quote = F)
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