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biobakery

bioBakery tools for meta'omic profiling

bioinformatics-skills

生物信息学技能提升，专注于工具使用与编程

blastn_scripts

course_bioinfo_training

data-analysis-with-r

Using gglot2, tidyr, dplyr, ggmap, choroplethr, shiny, logistic regression, clustering models and more

dmp

Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.1101/2020.11.27.401125v1 and full data can be requested from EGA (https://ega-archive.org/studies/EGAS00001005027) and Lifelines biobank (https://www.lifelines.nl/researcher)

easymetagenome

Easy Metagenome Pipeline 2019 (1.0)

easymicrobiome

Scripts and databases for amplicon and metagenome

ggplot2

A curated list of awesome ggplot2 tutorials, packages etc.

in-depth-ngs-data-analysis-course

learn-regex

Learn regex the easy way

liu2020proteincell

Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome

metagenome-illumina-sequencing-pipeline

宏基因组分析流程

metamic

Assessing and Improving the quality of metagenomic assemblies

microbiome_metabolome

宏基因组、代谢组和表型信息关联分析

microbiomebestpracticereview

Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

microbiomemarker

R package for microbiome biomarker discovery

ngs

Scripts for next generation sequencing

ngs-analysis

二代测序数据分析

ngs-pipeline

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

ngscheckmate

Software program for checking sample matching for NGS data

ngseasy

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

ngstools

Programs to analyse NGS data for population genetics purposes

raxml-ng

RAxML Next Generation: faster, easier-to-use and more flexible

squeezemeta

A complete pipeline for metagenomic analysis

taxmaps

Ultra-efficient taxonomic mapping of NGS data

tbtools

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

virfinder

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

zika-pipeline

The Zika bioinformatics pipeline