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Elisabeth Mathijs's Projects

arangs2015 icon arangs2015

Repository for Automated and Reproducible Analysis of NextGen Sequence 2015

ectools icon ectools

tools for error correction and working with long read data

iva icon iva

de novo virus assembler of Illumina paired reads

kmc icon kmc

Fast and frugal disk based k-mer counter

lilo-capv icon lilo-capv

Stitch together Nanopore tiled amplicon data without polishing a reference

metavelvet icon metavelvet

An extension of Velvet assembler to de novo metagenome assembly from short sequence reads

ngs-workflows icon ngs-workflows

Source code, data and documentation to demonstrate automation in NGS data analysis

pilon icon pilon

Pilon is an automated genome assembly improvement and variant detection tool

proovread icon proovread

PacBio hybrid error correction through iterative short read consensus

seqfilter icon seqfilter

Versatile FASTA/FASTQ sequence file analysis and modification tool

vagrant-lamp-stack icon vagrant-lamp-stack

A dead-simple LAMP stack without any bells and whistles for your basic Linux/Apache/MySQL/PHP install.

vsc_ngs_workshop icon vsc_ngs_workshop

This is the repository of the Genomics Core High Performance Computing for Genomics workshop.

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