eipm Goto Github PK

ai-biopsy

Biopsy-free prediction of prostate cancer aggressiveness using deep learning and radiology imaging

beacon

Dockerized GA4GH Beacon

bioinformatics

Tool including several common bioinformatics software applications

bowtie2

A fast and sensitive gapped read aligner

bridge2ai-redcap

Bridge2AI Voice | REDCap

cin

cnn-smoothie

Deep Convolutional Neural Networks Enable Discrimination of Heterogeneous Digital Pathology Images

combinatorial-drug-screening-data-analysis

dgvar

Screening deleterious germline variants (DGVs) in WCM UC cohort

ervmap

ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed in their RNA seq data.

hello-mess-nf

A Nextflow pipeline to experiment with DSL2 + Zero Mess

hello-nextflow

An hello world pipeline to test nextflow installations.

htds-rawdata

Experimental data structuring and analysis.

omero-server-docker

EIPM fork of OMERO.server production docker image, with OMERO.dropbox support added.

paper_trail

Track changes to your models' data. Good for auditing or versioning.

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

pmkb-bot

PMKB bot for the Precision Medicine Knowledge Base using Microsoft Bot Framework.

rnaseq-messaging

RNAseq pipeline to demonstrate use of messaging

salmonte

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

stork

Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization

stork-a

stork-v

This project aims to enhance the assessment of fertilized human embryos, a critical step in the process of in vitro fertilization (VF). The research paper behind this project introduced BELA, the Blastocyst Evaluation Learning Algorithm, a novel model for embryo ploidy status prediction.

strides

Supporting the Azure + NIH STRIDES initiative

sunspot_autocomplete

unity-workshop

R Lab XR in Healthcare Unity Workshop