Comments (4)
Zulko
commented on July 21, 2024
Hi, there is no official way to cite this library now. A simple way is to refer to it as "the DNA Features Viewer Python library" and give the source link (https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer) either in parenthesis or in the bibliography.
I'll update you if I manage to get a more citable form (DOI, short paper, etc.).
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sarah872
commented on July 21, 2024
thanks! the tool is really nice, so go and publish!
If combined with SVG export it is super powerful.
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veghp
commented on July 21, 2024
Please find the publication here: https://www.biorxiv.org/content/10.1101/2020.01.09.900589v1
'Citation Tools' on the right.
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veghp
commented on July 21, 2024
DNA Features Viewer has been published in Bioinformatics:
Zulkower and Rosser (2020), DNA Features Viewer: a sequence annotation formatting and plotting library for Python.
Bioinformatics, Volume 36, Issue 15, 1 August 2020, Pages 4350–4352, https://doi.org/10.1093/bioinformatics/btaa213
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Related Issues (20)
- Bio.Alphabet HOT 2
- no encoding declared in GraphicRecord.py HOT 1
- To bold the base HOT 4
- How to display differences from Variant Calling File? HOT 5
- How to use `plot_on_multiple_pages` with `ax` attribute ? HOT 1
- plot_with_bokeh ignores strand=0 and still plots arrowhead HOT 1
- plot_with_bokeh gives BAD_COLUMN_NAME errors and uses default font when using bokeh 2.3.0 HOT 1
- Broken Axis HOT 1
- Change shape of feature arrows HOT 2
- Cannot apply sequence translation on plot_on_multiple_lines or plot_on_multiple_pages HOT 2
- BiopythonTranslator: SeqFeatures with location_operator='join' get wrong position
- Labels overlap whan sharing axis HOT 2
- Feature request: x_lim best-fit HOT 6
- Enhanced Bokeh support for multiple plots HOT 2
- Linking exon annotations with intron lines, and other things. HOT 5
- Add an example which plots sequence features not starting from 0 HOT 5
- truncated scaffolds from gff files HOT 4
- figure is not coming
- type hints support HOT 1
- Error on BioPython v1.8.0 HOT 9
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