Comments (3)
I have not found such option in the docs, but if you remove labels then you can get a plot without labels:
from dna_features_viewer import BiopythonTranslator
graphic_record = BiopythonTranslator().translate_record("example_sequence.gb")
for feature in graphic_record.features:
feature.label = None
graphic_record.plot(figure_width=5)
from dnafeaturesviewer.
One way is to redefine compute_feature_label
like in the last example in the Readme. Here is the minimal version:
from dna_features_viewer import BiopythonTranslator
class MyCustomTranslator(BiopythonTranslator):
def compute_feature_label(self, feature):
# display labels for CDS only, no label for other features
return "CDS here" if (feature.type == "CDS") else None
graphic_record = MyCustomTranslator().translate_record("example_sequence.gb")
from dnafeaturesviewer.
I have not found such option in the docs, but if you remove labels then you can get a plot without labels:
from dna_features_viewer import BiopythonTranslator graphic_record = BiopythonTranslator().translate_record("example_sequence.gb") for feature in graphic_record.features: feature.label = None graphic_record.plot(figure_width=5)
Hi Veghp and Zulko,
Thank you for your help. I will try this.
Appreciate your help.
from dnafeaturesviewer.
Related Issues (20)
- Bio.Alphabet HOT 2
- no encoding declared in GraphicRecord.py HOT 1
- To bold the base HOT 4
- How to display differences from Variant Calling File? HOT 5
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- plot_with_bokeh ignores strand=0 and still plots arrowhead HOT 1
- plot_with_bokeh gives BAD_COLUMN_NAME errors and uses default font when using bokeh 2.3.0 HOT 1
- Broken Axis HOT 1
- Change shape of feature arrows HOT 2
- Cannot apply sequence translation on plot_on_multiple_lines or plot_on_multiple_pages HOT 2
- BiopythonTranslator: SeqFeatures with location_operator='join' get wrong position
- Labels overlap whan sharing axis HOT 2
- Feature request: x_lim best-fit HOT 6
- Enhanced Bokeh support for multiple plots HOT 2
- Linking exon annotations with intron lines, and other things. HOT 5
- Add an example which plots sequence features not starting from 0 HOT 5
- truncated scaffolds from gff files HOT 4
- figure is not coming
- type hints support HOT 1
- Error on BioPython v1.8.0 HOT 9
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from dnafeaturesviewer.