Comments (4)
What is your matplotlib version?
import matplotlib
print (matplotlib.__version__)
from dnafeaturesviewer.
I'm using the version 3.1.3
from dnafeaturesviewer.
Hmmm, same version I have on my machine, and I don't get any error.
Try adding this at the top of your script:
import matplotlib
matplotlib.use('agg')
from dnafeaturesviewer.
Thank you, @Zulko.
I tried now using matplotlib.use("Agg")
, the error is gone. However, I've been only able to see the results as an exported PNG/PDF file.
from dna_features_viewer import BiopythonTranslator
ax, _ = annotation.plot()
annotation.plot_legend(ax=ax)
ax.figure.tight_layout()
ax.figure.savefig(path + "custom_bopython_translator.pdf")
Which command one can use to see the plot on XQuartz?
Is it possible with the Agg
renderer?
from dnafeaturesviewer.
Related Issues (20)
- BiopythonTranslator: SeqFeatures with location_operator='join' get wrong position
- Labels overlap whan sharing axis HOT 2
- Feature request: x_lim best-fit HOT 6
- Enhanced Bokeh support for multiple plots HOT 2
- Linking exon annotations with intron lines, and other things. HOT 5
- Add an example which plots sequence features not starting from 0 HOT 5
- truncated scaffolds from gff files HOT 4
- figure is not coming
- type hints support HOT 1
- Error on BioPython v1.8.0 HOT 9
- type error for global variable related to BioPython update HOT 2
- sequences display from 1 not 0 ? HOT 1
- How to solve the memory problem of batch plotting? HOT 3
- Overlapping arrows in circular DNA HOT 1
- CircularGraphicRecord does not work. Unable to make circular graphs HOT 1
- UndefinedSequenceError with gff files and BioPython 1.81
- Oval or diamond/octagon in addition to arrows for displayed features? HOT 1
- 'Seq' object has no attribute 'defined' HOT 2
- feature location in a join, how to correnctly translate HOT 3
- Dna first project
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