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Name: Emma Thomson
Type: User
Bio: Clinical professor of virology at the MRC-University of Glasgow Centre for Virus Research and LSHTM
Name: Emma Thomson
Type: User
Bio: Clinical professor of virology at the MRC-University of Glasgow Centre for Virus Research and LSHTM
Identifies identical reads present in sam files mapped against the same reference genome using a tab delimited file of accession numbers and virus names
Uses phylogeny to identify and remove cross-contamination from a directory containing .sam files using user-specified thresholds
Take a fasta file created using window co-ordinates from GLUE and select above a certain proportion then randomly select up to 100 of these
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