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Fall 2022 Bioengineering 298 Final Project: using protein networks to understand drug and disease mechanisms
Calcium-binding and -signaling proteins in oxidative stress and cardiovascular disease
CaseOLAP: A cloud computing platform for phrase mining. This consists of downloading, parsing, and indexing of data, text-cube creation, entity count with search functionality, and caseOLAP score calculation.
Fall 2022 Project collaborating with Alexander Pelletier et al. to improve CaseOLAP's input data quantity, result quality, and usability.
Uses PubTator3 to identify genes in PubMed articles. Uses PubMed API and MeSH annotations to identify articles studying anatomies. Uses co-occurrence of gene mentions and anatomy topics to calculate gene-anatomy associations. Allows users to choose anatomies (MeSH) and to choose genes (NCBI) or automatically curate genes via GO terms
🍇 GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluations
Know2BIO: A Comprehensive Dual-View Benchmark for Evolving Biomedical Knowledge Graphs
knowledge_graph_of_text_mined_pubmed
Augmenting a network to find metapaths that capture a Drugs MoA
Take PubMed IDs and map them to PubMed Central IDs
A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.
Summer 2021: CaseOLAP-based protein and pathway analyses on neurodegenerative mitochondrial disease publications
Some homework assignments to be shared
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.