Comments (5)
I guess one can always change the assay
of the object itself using DefaultAssay
, but that gets a bit annoying swapping back and forth.
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You are correct that DittoSeq currently uses the default assay.
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I think adding this option would require a new, Seurat-v3 specific, input for most viz functions + my gene extraction-related functions + dimensional reduction extraction functions. It can be done, but would take time.
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Yeah, this is probably something best just left to the user then, frankly. Noting it in the docs may be a good idea, but I wouldn't make adding it a huge priority.
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I'm glad you agree =p.
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Related Issues (20)
- `scales = "free"` not properly respected in `split.adjust` when multiple vars provided to dittoPlot (and co) HOT 3
- Adding 'padding' to DotPlot rows to highlight differences across celltypes? HOT 6
- About HOT 3
- working with dataframe HOT 2
- have x-values sort numerically? HOT 3
- X values in dittoBarPlot not ordering according to x.reorder HOT 6
- Throw error if dimReds are NA HOT 3
- working with altExps HOT 14
- dittoHeatmap on "scale.data" and rowSums == 0 HOT 4
- Prepare for upcoming Seurat v5 release
- Changing titles on multi-plots / pseudo facet titles HOT 2
- How to remove median in boxplot? HOT 7
- Add parameter to control boxplot outlier size HOT 2
- Change colors of genes in dittoHeatmap HOT 4
- Error generating dittoheatmap HOT 2
- Dotplot on single gene split by two conditions HOT 5
- dittoHeatmap HOT 5
- dittoHeatmap with pale heat map colors HOT 1
- Support for Seurat V5? HOT 3
- Marker disappeared in the heatmap HOT 3
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