Name: Veera
Type: User
Company: Aarhus University
Bio: MD, PhD. Post doctoral researcher @iPSYCH, Denmark. Studying cognition in psych disorders. Python and R programmer.
Location: Aarhus, Denmark
Blog: http://pure.au.dk/portal/en/persons/id(8b28ba1e-0b5c-403e-90d5-9ba7827df933).html
Veera's Projects
Design a tool to optimize the parameters of any command line tool
Collection tiny bash procedures
cython + htslib == fast VCF and BCF processing
Veera's blog
A pipeline for variant calling of Exome using GATK best practice workflow
Exercise to practice collaborative forking workflow.
methods for functional summary-based imputation
GEnomic Integrated suitE
A genie for your NGS analysis
R package to create manhattan plots using ggplot
Showcase of plots
Example for gh-pages lesson.
Git bisect exercise.
GTEx Consortium data production and analysis pipelines
A set of tools for benchmarking or evaluating GWAS algorithms. A detailed description can be found in C. Widmer et al., Scientific Reports 2014.
Codebook from my GWAS cookbook
A curated list of things to do in a GWAS study
A minimalist, mobile first Jekyll theme.
Run GATK [EXOME/PANEL + WGS] workflow in iPSYCH-GENOME.DK
using gotcloud inside iPSYCH cluster
Method for copy number variation detection for dried blood spots.
Curated decibans of Julia language.
Create regional association plots from GWAS or meta-analysis
MAGMA gene-set analysis workflow with gwf
Metaxcan software and analysis results of various summary statistics inside genome.dk cluster
An R alternative to MetaXcan
Genie clone in Minerva
Pipelines for NGS, imputation, gwas, ...
Vim plugin to work with R