install problem about admixtools HOT 13 CLOSED

This is due to the recent changes to the gcc compiler. The flags, and their usage has changed. Try my makefile.
Replace your Makefile with mine:
http://pastebin.com/Fpjwzczh
Run make clobber; make all; make install

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Hi,
This did not work for me. The compiled executables had a wrong behaviour.

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I also used this new Makefile, but got the result:
/usr/bin/ld: cannot find -lopenblas
collect2: ld returned 1 exit status
make: *** [qpAdm] Error 1
how should I deal with this problem, thankyou!

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@XuexueLiu This means the linker cannot find the required openblas library. You resolve this by adding the linker option to inform of the location of the library, which must be installed somewhere.

For example, if the library is located in the directory /n/app/openblas/0.2.19/lib add the gcc option
-L/n/app/openblas/0.2.19/lib

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I also used this Makefile, but got the following error:

In file included from qpAdm.c:4:0:
qpAdm.c: In function ‘calcevar’:
qpAdm.c:1041:5: error: expected ‘(’ before ‘__builtin_isnan’
if isnan(y) {
^
qpAdm.c: In function ‘scorel’:
qpAdm.c:1140:1: warning: implicit declaration of function ‘eigvecs’ [-Wimplicit-function-declaration]
eigvecs(V, evals, evecs, n) ;
^
: recipe for target 'qpAdm.o' failed
make: *** [qpAdm.o] Error 1

I looked in qpAdm.c and checked line 1041. This is what is there:

ZALLOC (wjack, nblocks, double);
for (k = 0; k < nblocks; ++k) {
wjack[k] = asum (bbot[k], dim);
y = asum(tmean[k], nl) ;
if isnan(y) {
copyarr(totmean, tmean[k], nl) ;
wjack[k] = 0 ;
}

}

With regards to the warning this is what line 1140 in qpAdm looks like:

ZALLOC(evecs, n*n, double) ;
ZALLOC(evals, n, double) ;
ZALLOC(uvals, n, double) ;
ZALLOC(u1, n, double) ;
ZALLOC(theta, n, double) ;
ZALLOC(ff, n, double) ;

eigvecs(V, evals, evecs, n) ;
mulmat(u1, evecs, d, n, n, 1) ;

vst(u1, u1, 1000, n) ;
vst(evals, evals, 1000*1000, n) ;
copyarr(evals, theta, n) ;

//printf("unorms: %12.6f %12.6f\n", asum2(u1, n), 10001000asum2(d, n)) ;
vvt(uvals, u1, u1, n) ;
vmaxmin(theta, n, &tmax, &tmin) ;

Thanks in advance everyone.

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Thanks bumblenick! Will you be updating the Makefile in AdmixTools at Github?

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What about source files such as qpAdm.c. Will those be updated?

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I have resolved the original Makefile issue here in caef66e.

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I'm sorry I know this is closed, but I just installed AdmixTools (including the new Makefile) and I'm still getting the same error:

...
collect2: error: ld returned 1 exit status
make: *** [qp3Pop] Error 1

Any suggestions?

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@RCWilliams The messages that come before the ld error matter. If yours do not match those above, please open a new issue.

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