Comments (2)
bumblenick
commented on July 20, 2024
You only get the xtra columns with popfilename:
You are running with poplistname:
No, there is no logic here...
Nick
…On Wed, Nov 8, 2017 at 8:46 AM, kafka2184 ***@***.***> wrote:
Hello
In my log result I only have the value "Dstat" and "Z"
but no BABA et ABBA ...
and "best" notation are on which criteria ?
can help me please ?
thanks in advance.
Should have :
result: Pop1 (W) Pop2 (X) : Pop3 (Y) Pop4 (Z) D-stat Z BABA ABBA
#_of_SNPs_that_all_populations_have_data
my out file :
qpDstat version: 450
0 "N1" 1
1 "N9" 1
2 "N5" 1
3 "T1" 1
4 "D1" 1
5 "D22" 1
jackknife block size: 0.050
snps: 54984 indivs: 6
number of blocks for jackknife: 68
D stat Z
result: "N1" "N9" : "N5" "T1" -0.0998 -1.083 best
result: "N1" "N5" : "N9" "T1" -0.3463 -5.492
result: "N1" "T1" : "N9" "N5" -0.2576 -3.761
result: "N1" "N9" : "N5" "D1" -0.1446 -1.591 best
result: "N1" "N5" : "N9" "D1" -0.3724 -6.114
result: "N1" "D1" : "N9" "N5" -0.2441 -3.408
etc....
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kafka2184
commented on July 20, 2024
Hello
thanks for answer,
no I tried poplistname as well and no xtra column
THE INPUT PARAMETERS
##PARAMETER NAME: VALUE
DIR: /home/mferrand/
SSS: ALL
indivname: /home/mferrand/ALL.ind
snpname: /home/mferrand/ALL.snp
genotypename: /home/mferrand/ALL.geno
popfilename: /home/mferrand/list_D_aN9.txt
qpDstat version: 450
number of quadruples 12
0 "N1" 1
1 "N5" 1
2 "D1" 1
3 "D22" 1
4 "T1" 1
5 "N9" 1
jackknife block size: 0.050
snps: 54984 indivs: 6
number of blocks for jackknife: 68
D stat Z
result: "N1" "T1" : "N5" "N9" 0.2576 3.761
result: "N1" "D1" : "N5" "N9" 0.2441 3.408
result: "N1" "D22" : "N5" "N9" -0.0047 -0.675
result: "N5" "T1" : "N1" "N9" -0.0998 -1.083
result: "N5" "D1" : "N1" "N9" -0.1446 -1.591
result: "N5" "D22" : "N1" "N9" -0.3993 -6.860
result: "D1" "D22" : "N1" "N9" -0.2902 -4.143
result: "D1" "D22" : "N5" "N9" -0.2854 -3.621
result: "D1" "T1" : "N1" "N9" 0.0558 0.970
result: "D1" "T1" : "N5" "N9" 0.0265 1.316
result: "D22" "T1" : "N1" "N9" 0.3016 3.991
result: "D22" "T1" : "N5" "N9" 0.2684 3.879
end of qpDstat run
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