drbergman Goto Github PK
Name: Daniel Bergman
Type: User
Company: Johns Hopkins
Bio: Computational mathematician working on agent-based models of cancer-immune interactions.
Twitter: dbergman78
Location: Baltimore, MD
Daniel Bergman's Projects
agents.jl
Agent-based modeling framework in Julia
cheatsheets
My cheatsheets
fgfr3-bladdercancer-abm
Code base for agent-based model of bladder cancer used in "Dysregulated FGFR3 signaling alters the immune landscape in bladder cancer and presents therapeutic possibilities in an agent-based model"
globalmethod-phenotypeswitching
Source code used to run simulations related to global method in the context of phenotype switching.
globalvslocal
Repository of code for establishing how the global method compares to the local method for the paper "A global method for simulating intracellular signaling reduces computational time in multiscale agent-based models with systems biology applications"
intro-to-matlab-python
Files for use in the UCI Math Department's Intro to MATLab/Python seminar
math2d
A repository for UCI's Math 2D (differential multivariable calculus) material to help students interact with the material.
matplotlib
matplotlib: plotting with Python
physicell
PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!
physicell-studio
PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and visualize results. To contribute, fork and make PRs to the development branch.
physipkpd
a module template for drug treatment in PhysiCell
skills-code-with-codespaces
My clone repository
skills-code-with-codespaces_attempt_2
My clone repository
tumor-immune-emt
A repository for writing this paper.
tumor-immune-emt-code
Code associated with Bergman, Karikomi, Nie, MacLean (2019). Modeling the competing effects of the immune system and EMT on tumor development.
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