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biowrappers

buzztweet

A web scraping tool that uses a neural network to perform sentiment analysis on tweets in real time. Buzzfeed meets Twitter. Presented during a 2017 hackathon and was given an award for the best use of web scraping.

charger

Characterization of Germline variants

conda-recipes

destruct

Accurate Rearrangement Detection using Breakpoint Specific Realignment

format_input_yamls

leloupgoldbeter

Assessing the affect of non self-sustained oscillators on circadian entrainment in a model of the circadian rhythm proposed Leloup and Goldbeter, 2003.

objectorientedide

A basic IDE with a text editor and java scanner and compiler that follows good object orientation.

polyester

Bioconductor package "polyester", devel version. RNA-seq read simulator.

pypeliner

qc_setup

remixt

Clone-specific genomic structure estimation in cancer

replication_annotation

sceed

A computational method to aid the design and analysis of single cell RNA-seq experiments for cell type identification

scgenome

scrna-pipeline

shah lab rnaseq pipeline

single_cell_pipeline

Single Cell Analysis Automated Workflow

sisyphus

Shahlab workflow and data management automation

speedseq

A flexible framework for rapid genome analysis and interpretation

sv_genotyping_hackathon

hackathon project for single cell structural variant genotyping

thesis

Resolving UMI sequencing errors through machine learning and network-based approaches to improve the accuracy of rare cell type identification in single cell RNA-sequencing data.

vision

for CS vision

wgs

Whole genome workflows

wgs-sample-qc-env-setup

wgspipeline_docker_containers