Name: Donovan H. Parks
Type: User
Company: Bioinformatic consultant
Bio: Bioinformatic consultant interested in metagenomics, human microbiota, biogeography, information visualization, and machine learning.
Twitter: donovan_parks
Location: Canada
Donovan H. Parks's Projects
Solutions for Advent of Code
Cache-aware ANI calculations.
Generative art projects
C++ background substraction library
Python package for common tasks in bioinformatic.
Many visualizations of beta diversity.
Identify, classify, and assemble 16S reads in metagenomic data.
A toolbox for comparative genomics.
Bin scaffolds from a single metagenomic sample into population genomes.
Clustering of sequences from environmental samples.
A toolkit for creating publication-quality images of phylogenetic trees.
Taxon- and phylogenetic-based beta diversity measures.
A genomic minhashing implementation in Rust
Homology- and composition-based classifiers for assigning a taxonomic attribution to metagenomic fragments.
A toolbox for working with gene trees.
A toolbox for working with genome.
A toolbox for working with genome trees.
Finds links between 16S reads and assembled contigs.
a cheat-sheet for mathematical notation in code form
python code for bioinformatics projects
Calculation of beta diversity over phylogenetic networks.
Putative Evolutionary Trees
Assign taxonomic ranks based on evolutionary divergence.
Prodigal Gene Prediction Software
Visualization of large trees and associated metadata
A toolbox for improving metagenome-assembled genomes.
Rapid large-scale prokaryote pan genome analysis
Fast genome ANI estimation using k-mer sketches.
Statistical Analysis of Metagenomic Profiles
Ensemble binning strategies for combining the output of multiple binning methods.