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followers: 42.0 following: 17.0 repos: 82.0 gists: 1.0

Name: Baihan Lin

Type: User

Company: Columbia University

Bio: Design codes of life~

Twitter: doerlbh

Location: New York, NY

Blog: https://www.baihan.org

Hi there! Welcome to my open-source deep space 👋

📖 About me

🌱 Studied machine learning, applied mathematics, neuroscience and psychology
🎓 PhD at Columbia University, with MS and BS+BA from UW
⚡ Spent fun time at IBM, Google, Microsoft, Amazon and BGI
🐽 Into music, skateboard, aikido, karate and DIY
👀 Visit www.neuroinference.com for more information

🚀 GitHub Projects

As the owner

[Lin, CEC 2022; Lin & Bouneffouf, FUZZ 2022] BanditZoo: Python library for bandits and RL in real-world environments
[to come] x2paper: Python-based academic reference and note management system with relational database
[Lin, IJCAI 2020] Virtual2Real: Python-based real-time augmented reality with projectively realistic projection of webcam streams
[Lin, HBAI 2020; Entropy 2022] UAM: Python-based neural network normalization module with regularity constraints
[Lin & Zhang, INTERSPEECH 2020; ACML 2021] VoiceID-on-the-fly: Matlab/Javascript-based speaker diarization system that learns from scratch
[Lin, AJCAI 2020] BerlinUCB: Matlab-based contextual bandit with self-supervision for semi-supervised online learning
[Lin et al., AAMAS 2020] MentalRL: Python-based reinforcement learning agents with mental disorder propensities
[Lin et al., arXiv 2020] DilemmaRL: Python-based multi-agent reinforcement learning in iterated prisoner's dilemma
[Lin et al., IJCNN 2022; PLOS ONE 2022] HumanLSTM: Python-based prediction of human decision making with recurrent neural networks
[Lin et al., ISMB 2019; arXiv 2022] scTSA: Python-based topological simplicial analysis of single-cell RNA sequencing data
[Lin et al., ICDMW 2018] ABaCoDE: Matlab-based deep feature extraction with adaptive routing
[Lin & Kriegeskorte, arXiv 2018] AGTIC: Matlab-based adaptive independence criterion with geo-topological transform
[Lin et al., NeuroFutures 2016] PatchProcessor: Java-based GUI for patchiness analysis of Immunohistochemistry slices of rat brains
[Lin et al., UW Research Symposium 2015] QuantiPatch: Java-based patch index computation of ocular dominance columns of rat brains

As a main contributor

[Lin et al., CCN 2019] RSAToolbox: Python library for Representational Similarity Analysis

🔥 There are a lot more to come this year! Stay tuned and Happy coding~

Baihan Lin's Projects

abacode

Code for our ICDMW 2018 paper: "Contextual Bandit with Adaptive Feature Extraction".

agtic

Code for our paper: "Adaptive Geo-Topological Independence Criterion".

awesome-diarization

A curated list of awesome Speaker Diarization papers, libraries, datasets, and other resources.

awesome-rnn

Recurrent Neural Network - A curated list of resources dedicated to RNN

bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

banditzoo

Python library of bandits and RL agents in different real-world environments

berlinucb

Code for our AJCAI 2020 paper: "Online Semi-Supervised Learning in Contextual Bandits with Episodic Reward".

bgi_autism_genomics_qc_nactg_stat

Quality Control of genomics reads based on NACTG and remove reads with low-quality reads.

bgi_autism_genomics_qc_report_adapter

Generate a report of genomics data and remove reads with adapter and low-quality reads.

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

cnmf_e

Constrained Nonnegative Matrix Factorization for microEndoscopic data

code_testing_undergrad

a repository to store testing codes in my undergrad time.

compbio_modeling

A repository for modeling biological system

compneuro_neuron_tuning_curve

model neuron tuning curve

compneuro_neuronal_rc_hh_model

model neuronal RC Circuit in HH model

data-structures

repository for learning web-based data structures (engineering for interactive systems)

dblab_abego_solver

ABEGO_solver: use ABEGO to filter out good models -- by Baihan Lin with Baker Lab

dblab_bp_creator

bp_creator: create WC bp file emuneratively -- by Baihan Lin with Baker Lab

dblab_bp_solver

bp_solver: create protein whole complex blueprint from dimer -- by Baihan Lin with Baker Lab

dblab_bp_wc2dm

wc2dm: create DM bp file from WC bp file -- by Baihan Lin with Baker Lab

dblab_cmd_scripts

assembly-related scripts that I wrote to facilitate analysis automation, file searching and rearrangements -- by Baihan Lin with Baker Lab

dblab_rosetta_clone_tools

A public repository with scripts and tools for cloning and setting up RosettaCommons repositories.

deepbind

Training and testing of DeepBind models.

dilemmarl

Code for our PRICAI 2022 paper: "Online Learning in Iterated Prisoner's Dilemma to Mimic Human Behavior".

doerlbh

dream_pdbiomarker

a repository for Parkinsons Disease Digital Biomarker DREAM Challenge -- by Baihan Lin with Pe'er Lab

edgerefinement

edward

A library for probabilistic modeling, inference, and criticism. Deep generative models, variational inference. Runs on TensorFlow.

epidemic_ebola_bat_model

A repository for epidemic modeling of Ebola Outbreak 2014