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algorithms-bioinformatics

Scripts used in Algorithms in Bioinformatics course Genome assembly, Sequence alignment, Mutual information and Graph Inference networking

clean_tree2

Forensic Y-SNP analysis beyond SNaPshot: High-resolution Y-chromosomal haplogrouping from low quality and quantity DNA using Ion AmpliSeq and targeted massively parallel sequencing

glycopeptides

Glycopeptide antibiotics Prediction using AT domains in NRPS

ilabu

Website for the ilabu platform

machine-learning

Transcriptome variation between different brain tissues. For this analysis RNA sequencing data is used which contains 1259 samples and 10.574 genes. The data is generated by the Genotype Tissue Expression consortium.

primers

Genome Primers Validation

smoking-microbiome

Prediction of smoking habits from class imbalanced saliva microbiome data using data augmentation and machine learning

smokingmicrobiome

tissueid

A novel taxonomy-independent deep learning microbiome approach allows accurate classification of human epithelial materials

y-cpg

Male-specific age estimation based on Y-chromosomal DNA methylation

yleaf

Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data