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Demarcus Briers's Projects

cell_model icon cell_model

Collection of Code for an Agent Based Cellular Model

cfdpython icon cfdpython

A sequence of Jupyter notebooks featuring the "12 Steps to Navier-Stokes" http://lorenabarba.com/

combat.py icon combat.py

python / numpy / pandas / patsy version of ComBat for removing batch effects.

cytoflow icon cytoflow

A Python toolbox for quantitative, reproducible flow cytometry analysis

fpm icon fpm

Effing package management! Build packages for multiple platforms (deb, rpm, etc) with great ease and sanity.

kegg-crawler icon kegg-crawler

A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.

luigi icon luigi

Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.

pathos icon pathos

parallel graph management and execution in heterogeneous computing

pathoscope icon pathoscope

Pathoscope: Species identification and strain attribution with unassembled sequencing data

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