Related Issues (20)
- Make python 3 compliant
- Testing environment HOT 9
- Improved classification time with KMC HOT 16
- Make a Conda/bioconda release of CMash HOT 3
- Update PyPi release of CMash
- Multiple k-mer sizes bug HOT 2
- Multiple k-mer sizes confirmation and testing HOT 2
- Test k-mer frequency distribution idea HOT 2
- StreamingQueryDNA... may be case sensitive to sequences HOT 1
- In post-processing, find correct denominator
- Modularize StreamingQueryDNADatabase.py HOT 3
- Minor refactor of Query.py HOT 1
- Create script to demonstrate how to re-train CMash
- In MakeStreamingDNADatabase.py, don't require output directory to exist
- Gzipping all training files results in a nice reduction: add feature that allows scripts/modules to handle this
- For very large databases, creation of TST is slow and memory intensive HOT 6
- Ground truth computation is too slow for realistic data set sizes HOT 1
- Add KMC as requirement
- Is CMash metric? HOT 4
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from cmash.