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demian1 avatar demian1 commented on May 22, 2024 1

I've been playing around with the function on my own data, and it works great so far!

Of course the clustermaps do not align anymore if one provides different number of row or column annotations

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DingWB avatar DingWB commented on May 22, 2024

Yeah, you are right. Sorry for the mistake. I have already fixed it in the latest GitHub push. Please install it using pip install git+https://github.com/DingWB/PyComplexHeatmap
Please kindly test it and give me feedback if there are any bugs.

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demian1 avatar demian1 commented on May 22, 2024

Thanks for the quick fix!

I would also recommend the option to pass height_ratios and width_ratios to the function. Something like:

if axis == 1:  # horizontally
        wspace = col_gap * mm2inch * ax.figure.dpi / (ax.get_window_extent().width / n)
        nrows = 1
        ncols = n
        width_ratios = [cm.data2d.shape[1] for cm in cmlist] if width_ratios is None else width_ratios
        height_ratios = None
else:  # vertically
        hspace = row_gap * mm2inch * ax.figure.dpi / (ax.get_window_extent().height / n)
        nrows = n
        ncols = 1
        width_ratios = None
        height_ratios = [cm.data2d.shape[0] for cm in cmlist] if height_ratios is None else height_ratios

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DingWB avatar DingWB commented on May 22, 2024

That's a good idea. Could you please make a pull request?

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demian1 avatar demian1 commented on May 22, 2024

Just did

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