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16s_processing

2017-september-microbial-community-analysis-workshop

2017 September Microbial Community Analysis Workshop

ad_gutmicrobiome_case_control

any2fasta

Convert various sequence formats to FASTA

autism-fmt1

beer_its_analysis

BeerDeCoded first results using ITS

bioreactor-modelling

fed batch bioreactor modeling and parameter estimation with neural nets using python and tellurium

c57-win-apx-16sv3-4

corrplot

Package corrplot is for visualizing a correlation matrix

curso_perl4bioinfo

Curso de Perl para bioinformática - UNAM

curso_rstats

Apuntes sobre correlación, regresión y ANOVA para TIB2018-T2, CCG-UNAM, 2018

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

docker_mini_training

Material for the Docker mini training at INMEGEN.

faprotax-tools

Parser and annotation tools using the FAPROTAX database (Louca S. et al., 2016)

frontiermicrobiologybifidobacteriafiguresanddata

The complete code and data to generate all figures shown in the manuscript "Innovative Biomarkers for Obesity and Type 1 Diabetes Based on Bifidobacterium and Metabolomic Profiling." submitted to Frontiers in Microbiology

illumina-utils

A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

inap

Integrated Network Analysis Pipeline

intro-python-enesj

intro-r-enesj

Este repositorio contiene código fuente, presentación e información general del curso introductorio de R.

isb_course_2022

Materials and presentation for the 2022 ISB Microbiome course.

isb_course_2023

Materials and presentation for the 2023 ISB Microbiome course.

jmodeltest2

Automatically exported from code.google.com/p/jmodeltest2

marmap

Import, plot and analyze bathymetric and topographic data

mbtools

R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.

mebs2

megahit

MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

metaboanalystr

metaboanalystr-1

R package for MetaboAnalyst

metagenome_pfam_score

Protocol for finding informative protein families and then using them to score metagenomic sets.

metagenomic-benchmark

The code deposited in this site contains the necessary scripts to integrate, standardise and generate taxonomic annotation matrices at the eight basic levels of taxonomic lineage: domain, phylum, class, order, family, genus, species and subspecies. These tools provide the possibility of comparing taxonomic annotation results obtained by different methods and databases.