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alignet

Protein protein interaction networks alignement

benzene-vanilla-cmake

CMake managed Benzene vanilla for playing and solving the game of Hex, easier to install!

bipy

DEPRECATED Lightweight bioinformatics pipeline tools using iPython

code

drug-protein-interaction

Molecular descriptors in the drug-protein interaction prediction problem

fcm

Implements the Fuzzy c-Means Algorithm

fcm-1

A simple implementation of the Fuzzy C-Means Clustering (FCM) in MATLAB/GNU-Octave.

geneanalysis

Gene expression analysis in R

geneexpression

Statistical analysis of gene expression data with multiple comparison tests in R.

gitrepo

network_analysis_of_mitonuclear_gwas_gene_expression_in_tissues

study gene expression accross 32 human tissues (1) geneExpressionBoxplot.r Generate boxplot of gene expression levels of gene sets in each tissue (2) geneExpressionSignificanceTest.r Pairwise comparison of gene expression levels of each disease gene set with that of background genes (e.g. protein-coding genes)

protein-protein-interaction

Java program to read the edge list for fly and yeast protein-protein interaction graphs. Computed network diameter, clustering coefficient, degree centrality, betweenness centrality for both the graphs and compared the two.

rstudio