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Name: David DeTomaso
Type: User
Bio: Computational Biologist
David DeTomaso's Projects
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
aws_tutorial
Short Introduction to using EC2 on AWS
berkeley
The Hacker Within at the University of California - Berkeley
cdips_tutorial_2017
Tutorial on Data Manipulation in Python
dotfiles
My config files
goatools
Python scripts to find enrichment of GO terms
google-scholar-scraper
Python library for scraping Google Scholar
group-meeting
A Jekyll template (based on holman/left) for a group that has regularly scheduled meetings, one post per date. Genericized from thehackerwithin/template
hotspot_analysis
Analysis scripts for writing the Hotspot paper
kinasebinding
Library for some bioinformatics data-manipulation
miniconda-install
Install Python packages as stand-alone applications using Miniconda
proj294
Final project code for CS 294
pyensembl
Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
rsem
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
scikit-learn
scikit-learn: machine learning in Python
sctransformpy
A Python implementation of of the scTransform method
scvi
Deep generative modeling for single-cell transcriptomics
seaborn
Statistical data visualization using matplotlib
snakemake_tutorial
A short tutorial on getting started with Snakemake for workflow management
sphinx-template
A template for a fully-functioning sphinx deployment
testing_gitlfs
Testing Git LFS
thglab
Work for THG Lab
thw_python_plotting
Tutorial on plotting in Python
tutorials
Various Python Tutorials and Talks
vim-ipython
A two-way integration between Vim and IPython 0.11+
yosefdb
A webserver + database for Yosef Group samples
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