dentearl Goto Github PK
Name: Dent Earl
Type: User
Company: Google, Inc.
Bio: Former bioinformatician turned big tech company drone. #noregrets
Location: Santa Cruz, CA
Name: Dent Earl
Type: User
Company: Google, Inc.
Bio: Former bioinformatician turned big tech company drone. #noregrets
Location: Santa Cruz, CA
Convenience function for quick and dirty data analysis
Analysis scripts to generate Tables and Figures for Assemblathon 1
Script to handle superscripted numbers for academic papers that have many authors (>20) and complex affiliations
Ancestral Variation Graph (AVG) viewer in javascript
cairo_visualization_wheel is a Python script that uses matplotlib to create visualization wheels as seen in Alberto Cairo's book The Functional Art http://www.thefunctionalart.com/2012/09/download-three-chapters-of-functional.html (see Figure 3.2).
A simple web page that uses the Google maps API to track time spent in traffic
Scripts and Makefile to generate infile set for the Evolver suite of genome evolution simulation tools.
jobTree based python wrapper to run the genome simulation tool suite Evolver
Utility to mask fasta formated files using a .bed file to define the regions to mask.
A script to make Fisher-Wright Coalescent plots using dot from graphviz
CVE-2014-0160 mass scan on the Alexa top sites.
mafJoin is a tool for combining pairs of MAF files that share a common sequence.
Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
Code, docs and experiments for the MSCA project.
Multiple Whole Genome Alignment Testing Suite
Tools to create plots showing N-statistics for genome assemblies
quick_plot is a python program that plots one or two column flat files from the command line.
Script to plot 1D data in 2D using the Hilbert Curve. Honestly a pretty terrible visualization technique for conveying information, but it looks cool.
Signaling Pathway Impact Analysis (SPIA) refactored into C
Given a multiple sequence alignment and a phylogeny relating the aligned sequences, StatSigMAw assesses every site of the alignment and identifies suspiciously aligned regions in the alignment. Xiaoyu Chen and Martin Tompa, "Comparative assessment of methods for aligning multiple genome sequences". Nature Biotechnology, vol. 28, no. 6, June 2010, 567-572. doi:10.1038/nbt.1637
The R function stem() ported to run on the command line for use in pipes!
Structure Harvester is a program for parsing the output of Pritchard's STRUCTURE and for performing the Evanno method.
summary() from the R project refactored to run on the command line for use in pipes!
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.