Comments (2)
dcdanko
commented on July 20, 2024
The script on the readme produces Series meant to be used in a program.
To write these Series to files add the following lines
krakenhll_richness.to_csv('krakenhll_richness.csv')
metaphlan2_entropy.to_csv('metaphlan2_entropy.csv')
Please note that the choice of krakenhll-richness and metaphlan2-entropy was arbitrary and just meant to show the defaults. I would recommend krakenhll as a tool and shannon entropy as a metric, this is the default.
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luizafaraujo
commented on July 20, 2024
Hi Danko!
Thanks! It worked! As suggested I used krakenhll and shannon entropy.
I opened other issue with some more questions!
I know that some of the questions seem basic but we are just starting to
analyze these kind of data. Thank you so much for all your help!
Best,
Luiza
Em qui, 17 de jan de 2019 às 12:41, David C Danko <[email protected]>
escreveu:
… The script on the readme produces Series meant to be used in a program.
To write these Series to files add the following lines
krakenhll_richness.to_csv('krakenhll_richness.csv')
metaphlan2_entropy.to_csv('metaphlan2_entropy.csv')
Please note that the choice of krakenhll-richness and metaphlan2-entropy
was arbitrary and just meant to show the defaults. I would recommend
krakenhll as a tool and shannon entropy as a metric, this is the default.
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