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16s-analyses-with-qiime

16spipelines

Pipelines for 16S rRNA gene analysis

3mcor

R-Metabolome-Microbiome-Meta Data Correlation Analysis

acstudy

ampliseq

16S rRNA amplicon sequencing analysis workflow using QIIME2

ancient-microbiome-denovo

ani

Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes

b8-multiomics

bee_bga

bifido_newborns

bio-ml

Command lines for the BIO-ML resources

chen2019scls

Arabidopsis Sesterterpene Modulate Root Microbiota related data and scripts

codebase

Code depository for papers

copd_metaanalysis

This depository contains key scripts used to analyze the data in the manuscript "Multi-omic meta-analysis identifies functional signatures of airway microbiome in COPD" by Wang et al.

covid-19

Dissecting the Role of the Human Microbiome in COVID-19 via Metagenome-assembled Genomes

covid-19-sse

covidpbmc

Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection

cvdsba

The project data analysis code

dayueban

Config files for my GitHub profile.

dayueban.github.io

中文博客

dmp

Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.1101/2020.11.27.401125v1 and full data can be requested from EGA (https://ega-archive.org/studies/EGAS00001005027) and Lifelines biobank (https://www.lifelines.nl/researcher)

easyamplicon

Easy Amplicon data analysis pipeline

easymetagenome

Easy Metagenome Pipeline 2019 (1.0)

fiber

flynn_lrcolon_cancprevres_2017

Kaitlin's repo for the LR KWS colon project

genelab_data_processing

german_mgwas_code

gmbc_hgts

Scripts and data resources from the HGT analysis of GMbC isolate genomes

gout-script

gpd

This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"