Comments (54)
davidsblom
commented on June 9, 2024
I forgot to mention this in the README (and I'll add it), but you should install openblas.
On ubuntu sudo apt-get install libopenblas-dev should do it.
Let me know how it goes
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SvensenSeven
commented on June 9, 2024
The same problem with LAPACK
`-- A library with LAPACK API found.
-- Looking for daxpy
-- Looking for daxpy - not found
-- Looking for daxpy_
-- Looking for daxpy_ - found
-- Looking for dpotrf
-- Looking for dpotrf - not found
-- Looking for dpotrf_
-- Looking for dpotrf_ - not found
CMake Error at cmake/external_projects/ElMath.cmake:348 (message):
Could not determine LAPACK format.
Call Stack (most recent call first):
CMakeLists.txt:388 (include)
-- Configuring incomplete, errors occurred!
See also "/home/sergey/foam/foam-extend-3.2/FOAM-FSI/src/thirdParty/elemental/build/CMakeFiles/CMakeOutput.log".`
CMakeError.txt
CMakeOutput.txt
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davidsblom
commented on June 9, 2024
Okay. Have you installed liblapack-dev?
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SvensenSeven
commented on June 9, 2024
Yes,
sergey@sergey-Notebook-PC:~/foam/foam-extend-3.2/FOAM-FSI$ sudo apt-get install liblapack-dev [sudo] password for sergey: Reading package lists... Done Building dependency tree Reading state information... Done liblapack-dev is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 36 not upgraded.
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davidsblom
commented on June 9, 2024
hmm.. strange. Can you try removing the build directory: src/thirdParty/elemental/build
Maybe cmake uses an old configuration from before you installed openblas.
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SvensenSeven
commented on June 9, 2024
I've done ./Allclean from FOAM-FSI and from src/thirdparty, but the result is the same.
Maybe it requires to install some additional package or maybe the version of Lapack in repository is too old ?
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davidsblom
commented on June 9, 2024
okay. I've added a docker build using ubuntu trusty for the foam-fsi-docker repo. When this image is available (https://app.wercker.com/davidsblom/FOAM-FSI-docker/runs), I'll try to reproduce your problem.
In the mean time, you could try to build openblas and lapack yourselves by removing the line -D MATH_LIBS="-L/usr/lib -lopenblas" \ from src/thirdParty/compile_elemental.
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SvensenSeven
commented on June 9, 2024
I've tried to build openblas and lapack by myself according to your suggestion. Yes, it works !
However during the compilation of percice I've got an error:
+ cd precice
+ '[' Opt = Opt ']'
+ scons -j 2 build=release python=off petsc=on compiler=mpicxx solib Symlink
./compile_precice: line 24: scons: command not found
sergey@sergey-Notebook-PC:~/foam/foam-extend-3.2/FOAM-FSI$
So, as you can see "scons" is missing. Please add to README that it is required to install "apt-get install scons". After installation of scons there is no problem
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SvensenSeven
commented on June 9, 2024
Did you have a success in reproducing the problem with openblas ?
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davidsblom
commented on June 9, 2024
scons needs to be added to the readme as well. Thanks!
I've just pushed commit 0db8132, so it's now compiling and testing with wercker on ubuntu-trusty.
https://app.wercker.com/davidsblom/FOAM-FSI/runs
it's still in the queue, so let's see what happens.
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davidsblom
commented on June 9, 2024
Apparent OpenMPI is not up to date on ubuntu trusty. Which MPI library do you use?
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SvensenSeven
commented on June 9, 2024
I use libopenmpi-dev and openmpi-bin packages. They were suggested for OpenFOAM compilation (http://openfoam.org/download/source/software-for-compilation/)
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davidsblom
commented on June 9, 2024
Okay. And you successfully compiled elemental? I get the following error while compiling elemental.
cd elemental
+ mkdir -p build install
+ cd build
+ '[' Opt = Opt ']'
++ pwd
+ cmake -D CMAKE_INSTALL_PREFIX=/pipeline/source/src/thirdParty/elemental/build/../install -D INSTALL_PYTHON_PACKAGE=OFF -D CMAKE_BUILD_TYPE=Release -D EL_DISABLE_PARMETIS=TRUE -D CMAKE_CXX_COMPILER=g++ -D CMAKE_C_COMPILER=gcc -D CMAKE_Fortran_COMPILER=gfortran -D EL_DISABLE_SCALAPACK=TRUE -D 'MATH_LIBS=-L/usr/lib -lopenblas' ..
-- The C compiler identification is GNU 4.8.4
-- The CXX compiler identification is GNU 4.8.4
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++
-- Check for working CXX compiler: /usr/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Found PythonInterp: /usr/bin/python (found version "2.7.6")
-- Appending /pipeline/source/src/thirdParty/elemental/include for Elemental's source includes
-- Appending /pipeline/source/src/thirdParty/elemental/build/include for Elemental's binary includes
-- The Fortran compiler identification is GNU
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/CXX Compiler Compatibility
-- Verifying Fortran/CXX Compiler Compatibility - Success
-- Performing Test _HAS_CXX11_FLAG
-- Performing Test _HAS_CXX11_FLAG - Success
-- Checking C++ support for "auto"
-- Checking C++ support for "auto": works
-- Checking C++ support for "class_override_final"
-- Checking C++ support for "class_override_final": works
-- Checking C++ support for "constexpr"
-- Checking C++ support for "constexpr": works
-- Checking C++ support for "cstdint_header"
-- Checking C++ support for "cstdint_header": works
-- Checking C++ support for "decltype"
-- Checking C++ support for "decltype": works
-- Checking C++ support for "defaulted_functions"
-- Checking C++ support for "defaulted_functions": works
-- Checking C++ support for "delegating_constructors"
-- Checking C++ support for "delegating_constructors": works
-- Checking C++ support for "deleted_functions"
-- Checking C++ support for "deleted_functions": works
-- Checking C++ support for "func_identifier"
-- Checking C++ support for "func_identifier": works
-- Checking C++ support for "initializer_list"
-- Checking C++ support for "initializer_list": works
-- Checking C++ support for "lambda"
-- Checking C++ support for "lambda": works
-- Checking C++ support for "long_long"
-- Checking C++ support for "long_long": works
-- Checking C++ support for "nullptr"
-- Checking C++ support for "nullptr": works
-- Checking C++ support for "rvalue_references"
-- Checking C++ support for "rvalue_references": works
-- Checking C++ support for "sizeof_member"
-- Checking C++ support for "sizeof_member": works
-- Checking C++ support for "static_assert"
-- Checking C++ support for "static_assert": works
-- Checking C++ support for "variadic_templates"
-- Checking C++ support for "variadic_templates": works
-- Found CXXFeatures: TRUE
-- CXX11_COMPILER_FLAGS=-std=gnu++11
-- Performing Test EL_HAVE_TEMPLATE_ALIAS
-- Performing Test EL_HAVE_TEMPLATE_ALIAS - Success
-- Performing Test EL_HAVE_STEADYCLOCK
-- Performing Test EL_HAVE_STEADYCLOCK - Success
-- Performing Test EL_HAVE_NOEXCEPT
-- Performing Test EL_HAVE_NOEXCEPT - Success
-- Performing Test EL_HAVE_NORMAL_DIST
-- Performing Test EL_HAVE_NORMAL_DIST - Success
-- Performing Test EL_HAVE_UNIFORM_INT_DIST
-- Performing Test EL_HAVE_UNIFORM_INT_DIST - Success
-- Performing Test EL_HAVE_UNIFORM_REAL_DIST
-- Performing Test EL_HAVE_UNIFORM_REAL_DIST - Success
-- Performing Test EL_HAVE___restrict__
-- Performing Test EL_HAVE___restrict__ - Success
-- Performing Test EL_HAVE___restrict
-- Performing Test EL_HAVE___restrict - Success
-- Performing Test EL_HAVE_restrict
-- Performing Test EL_HAVE_restrict - Failed
-- Using __restrict__ keyword.
-- Performing Test EL_HAVE_PRETTY_FUNCTION
-- Performing Test EL_HAVE_PRETTY_FUNCTION - Success
-- Found MPI_C: /usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
-- Found MPI_CXX: /usr/lib/libmpi_cxx.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
-- Found MPI_Fortran: /usr/lib/libmpi_f90.so;/usr/lib/libmpi_f77.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
-- Performing Test EL_HAVE_MPI_REDUCE_SCATTER
-- Performing Test EL_HAVE_MPI_REDUCE_SCATTER - Success
-- Will parse MPI header /usr/lib/openmpi/include/mpi.h
CMake Error at cmake/detect/MPI.cmake:88 (message):
Detected Open MPI version 1.6.5, but known bugs in version 1.6.5 of Open
MPI have led Elemental to require at least version 1.8.1
Call Stack (most recent call first):
CMakeLists.txt:356 (include)
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davidsblom
commented on June 9, 2024
What is the output of mpirun --version on your machine?
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SvensenSeven
commented on June 9, 2024
David, I've just forgot to tell you that I've also got such a problem. But I've downloaded the last version of OpenMPI and manually compiled it and install it to /usr. Therefore the output is:
sergey@sergey-Notebook-PC:~/foam/foam-extend-3.2/FOAM-FSI$ mpirun --version
mpirun (Open MPI) 2.0.1
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davidsblom
commented on June 9, 2024
okay. thought so, I guess I'll have to do the same thing when building the images. Will need some time though since all the images will be rebuilt.
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SvensenSeven
commented on June 9, 2024
I've got another error during compilation of FOAM-FSI itself. Do I need to open another issue or I can post it here ?
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davidsblom
commented on June 9, 2024
you can post it here I guess
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SvensenSeven
commented on June 9, 2024
sergey@sergey-Notebook-PC:~/foam/foam-extend-3.2/FOAM-FSI$ ./Allwmake
+++ dirname ./Allwmake
++ cd .
++ pwd
+ DIR=/home/sergey/foam/foam-extend-3.2/FOAM-FSI
+ cd /home/sergey/foam/foam-extend-3.2/FOAM-FSI
+ wmakeLnInclude src/boundaryConditions
+ wmakeLnInclude src/fvSchemes
+ wmakeLnInclude src/fsi
+ wmakeLnInclude src/RBFMeshMotionSolver
+ wmakeLnInclude src/SRFModelAbs
+ wmake libso src/boundaryConditions
'/home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libboundaryConditions.so' is up to date.
+ wmake libso src/fvSchemes
'/home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libfvSchemes.so' is up to date.
+ wmake libso src/fsi
'/home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libfsi.so' is up to date.
+ wmake libso src/RBFMeshMotionSolver
'/home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libRBFMeshMotionSolver.so' is up to date.
+ wmake libso src/SRFModelAbs
'/home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libSRFModelAbs.so' is up to date.
+ wmake libso src/extraSolidBodyMotion
'/home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libextraSolidBodyMotion.so' is up to date.
+ wmake applications/utilities/addInitialRandomVelocity
mpicxx -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNoRepository -ftemplate-depth-200 -I/home/sergey/foam/foam-extend-3.2/src/finiteVolume/lnInclude -I/home/sergey/foam/foam-extend-3.2/src/meshTools/lnInclude -IlnInclude -I. -I/home/sergey/foam/foam-extend-3.2/src/foam/lnInclude -I/home/sergey/foam/foam-extend-3.2/src/OSspecific/POSIX/lnInclude -fPIC -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPOpt/addInitialRandomVelocity.o -L/home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt \
-lfiniteVolume -lmeshTools -lfoam -liberty -ldl -lrt -lm -o /home/sergey/foam/foam-extend-3.2/applications/bin/linux64GccDPOpt/addInitialRandomVelocity
/usr/bin/ld: warning: libdecompositionMethods.so, needed by /home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libmeshTools.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: liblagrangian.so, needed by /home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libmeshTools.so, not found (try using -rpath or -rpath-link)
/home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libmeshTools.so: undefined reference to `Foam::decompositionMethod::New(Foam::dictionary const&)'
/home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libmeshTools.so: undefined reference to `Foam::decompositionMethod::typeName'
/home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libmeshTools.so: undefined reference to `Foam::Particle<Foam::passiveParticle>::typeName'
/home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libmeshTools.so: undefined reference to `Foam::Cloud<Foam::passiveParticle>::typeName'
collect2: error: ld returned 1 exit status
make: *** [/home/sergey/foam/foam-extend-3.2/applications/bin/linux64GccDPOpt/addInitialRandomVelocity] Error 1
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davidsblom
commented on June 9, 2024
I guess the compilation of foam-extend was not without problems. Can you paste the output of Allwmake in the folder foam-extend-3.2. That should give a hint what went wrong.
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SvensenSeven
commented on June 9, 2024
It looks clean:
foam_extend_log.txt
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SvensenSeven
commented on June 9, 2024
I've just mentioned that while building thirdParty libs the Allwmake script cannot download CCMIO library, because it is unavailable on suggested URL link
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davidsblom
commented on June 9, 2024
true, I have the same problem. That didn't pose any problems for me so far.
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davidsblom
commented on June 9, 2024
so, the linker ld cannot find the libraries libdecompositionMethods.so and liblagrangian.so. So can you recompile those libraries, and libmeshTools also if you're recompiling stuff anyway ;-)
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davidsblom
commented on June 9, 2024
and then check if the libraries are available in the folder $FOAM_LIBBIN
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SvensenSeven
commented on June 9, 2024
I.e. I need to ./Allclean and ./Allwmake.firstInstall on foam-extend-3.2 ?
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davidsblom
commented on June 9, 2024
that works, but then you'll recompile everything of foam-extend-3.2.
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davidsblom
commented on June 9, 2024
you can also do
cd foam-extend-3.2/src/decompositionMethods/decompositionMethods
wclean libso
cd -
cd foam-extend-3.2/src/lagrangian/basic
wclean libso
cd -
cd foam-extend-3.2/src/meshTools
wclean libso
and then
cd foam-extend-3.2
./Allwmake
saves you some time
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SvensenSeven
commented on June 9, 2024
I've done:
sergey@sergey-Notebook-PC:~/foam/foam-extend-3.2/src/decompositionMethods/decompositionMethods$ wclean libso
wclean ./
sergey@sergey-Notebook-PC:~/foam/foam-extend-3.2/src/decompositionMethods/decompositionMethods$ cd ..
sergey@sergey-Notebook-PC:~/foam/foam-extend-3.2/src/decompositionMethods$ ./Allwmake
+ wmakeLnInclude decompositionMethods
wmakeLnInclude: linking include files to decompositionMethods/lnInclude
+ wmake libso decompositionMethods
wmakeLnInclude: linking include files to ./lnInclude
Making dependency list for source file decompositionMethod/decompositionMethod.C
Making dependency list for source file manualDecomp/manualDecomp.C
Making dependency list for source file simpleGeomDecomp/simpleGeomDecomp.C
Making dependency list for source file geomDecomp/geomDecomp.C
Making dependency list for source file patchConstrainedDecomp/patchConstrainedDecomp.C
Making dependency list for source file hierarchGeomDecomp/hierarchGeomDecomp.C
SOURCE=decompositionMethod/decompositionMethod.C ; mpicxx -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/home/sergey/foam/foam-extend-3.2/src/foam/lnInclude -I/home/sergey/foam/foam-extend-3.2/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPOpt/decompositionMethod.o
SOURCE=manualDecomp/manualDecomp.C ; mpicxx -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/home/sergey/foam/foam-extend-3.2/src/foam/lnInclude -I/home/sergey/foam/foam-extend-3.2/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPOpt/manualDecomp.o
SOURCE=geomDecomp/geomDecomp.C ; mpicxx -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/home/sergey/foam/foam-extend-3.2/src/foam/lnInclude -I/home/sergey/foam/foam-extend-3.2/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPOpt/geomDecomp.o
SOURCE=simpleGeomDecomp/simpleGeomDecomp.C ; mpicxx -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/home/sergey/foam/foam-extend-3.2/src/foam/lnInclude -I/home/sergey/foam/foam-extend-3.2/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPOpt/simpleGeomDecomp.o
SOURCE=hierarchGeomDecomp/hierarchGeomDecomp.C ; mpicxx -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/home/sergey/foam/foam-extend-3.2/src/foam/lnInclude -I/home/sergey/foam/foam-extend-3.2/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPOpt/hierarchGeomDecomp.o
SOURCE=patchConstrainedDecomp/patchConstrainedDecomp.C ; mpicxx -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNDEBUG -DNoRepository -ftemplate-depth-200 -IlnInclude -I. -I/home/sergey/foam/foam-extend-3.2/src/foam/lnInclude -I/home/sergey/foam/foam-extend-3.2/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPOpt/patchConstrainedDecomp.o
'/home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libdecompositionMethods.so' is up to date.
+ wmake libso metisDecomp
'/home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libmetisDecomp.so' is up to date.
+ wmake libso parMetisDecomp
'/home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libparMetisDecomp.so' is up to date.
+ wmake libso scotchDecomp
'/home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libscotchDecomp.so' is up to date.
sergey@sergey-Notebook-PC:~/foam/foam-extend-3.2/src/decompositionMethods$
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davidsblom
commented on June 9, 2024
okay. looks good. you can also recompile liblagrangian and libmeshTools as indicated above.
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SvensenSeven
commented on June 9, 2024
I attach the log for compilation of lib lagrangian, it contains several "not found" warnings (lines 93, 236, 254, 261, 322, 353).
The line 93 is interesting. It states that /usr/bin/ld: warning: libdecompositionMethods.so, needed by /home/sergey/foam/foam-extend-3.2/lib/linux64GccDPOpt/libmeshTools.so, not found (try using -rpath or -rpath-link)
However, I've just compile it. Also I've checked that this library is in $FOAM_LIBBIN
lagrangian.txt
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davidsblom
commented on June 9, 2024
okay. then I'm a bit lost here. I would then try to recompile the whole foam-extend-3.2 library.
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SvensenSeven
commented on June 9, 2024
OK, it is quite long process, therefore I will do it during the night. In the morning I will inform you about the results
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SvensenSeven
commented on June 9, 2024
I've recompiled foam-extend-3.2. Log file is attached. There was no obvious error during the compilation.
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SvensenSeven
commented on June 9, 2024
David, is it possible to simply download already precompibled foam-extend-3.2.deb and compile FOAM-FSI with it ?
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davidsblom
commented on June 9, 2024
cannot find any obvious problems either in the log. I don't know of any precompiled packages though. I have a docker image for foam-extend, but don't think that that's what you're looking for.
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SvensenSeven
commented on June 9, 2024
The compiled deb package with foam-extend-3.2 is located here: https://sourceforge.net/projects/openfoam-extend/files/foam-extend-3.2/Ubuntu_14.04/
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davidsblom
commented on June 9, 2024
ah oke. sounds good.
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SvensenSeven
commented on June 9, 2024
how do you think is it possible to compile FOAM-FSI over it ?
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davidsblom
commented on June 9, 2024
I haven't used that package so far. You only need the libraries itself, so if the foam-extend-3.2 environment is loaded, and the build system is available, you shouldn't have any problems.
only thing I'm worried about is the MPI library. I guess the package is compiled with a different version.
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SvensenSeven
commented on June 9, 2024
Today I will try to compile FOAM-FSI with manually compiled foam-extend (I've sent to you a compilation log today). I will send you a result on Friday. Is it OK ?
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davidsblom
commented on June 9, 2024
sure
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SvensenSeven
commented on June 9, 2024
David, it seams that FOAM-FSI compiled successfully, however a lot of "could not open" messages appeared. I've just started the 3dTube tutorial and first iterations show no error.
However my home computer is too old, therefore fsiFoam occupied all RAM (2 Gb). That's why I could not completely test the correctness of compilation. I will try to compile and test FOAM-FSI on HP-workstation in our Biomedical Engineering department.
I think that in this evening I will send you a result
fsi_foam_make.txt
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davidsblom
commented on June 9, 2024
Sounds good. I guess it compiled successfully.
Op vrijdag 23 september 2016 heeft Sergey [email protected] het
volgende geschreven:
David, it seams that FOAM-FSI compiled successfully, however a lot of
"could not open" messages appeared. I've just started the 3dTube tutorial
and first iterations show no error.However my home computer is too old, therefore fsiFoam occupied all RAM (2
Gb). That's why I could not completely test the correctness of compilation.
I will try to compile and test FOAM-FSI on HP-workstation in our Biomedical
Engineering department.I think that in this evening I will send you a result
fsi_foam_make.txt
https://github.com/davidsblom/FOAM-FSI/files/488943/fsi_foam_make.txt—
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SvensenSeven
commented on June 9, 2024
David, I've compiled foam-extend-3.2 and FOAM-FSI on HP workstation. All seems OK. I've tried to run 3dTube sample (it is close to my research task), but unfortunately I've got an error after first 50 iterations on the first temporal step. I've tried to check fsi library using testsuite-fsi - no errors, all tests are passed. I've changed nothing in the 3dTube tutorial. Settings were not modified.
I've attached all the logs below. Output of test-fsi is too big (about 50 Mb), therefore it is not allowed to attach it. However, the results of test is the following:
[----------] Global test environment tear-down
[==========] 534 tests from 18 test cases ran. (17127 ms total)
[ PASSED ] 534 tests.
foam-extend-make.txt
fsi-foam-make.txt
log.blockMesh.txt
log.checkMesh.txt
log.decomposePar.txt
log.fsiFoam.txt
log.renumberMesh.txt
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davidsblom
commented on June 9, 2024
Hi,
Apparently the coarsening strategy for the mesh deformation is not working
as it should. You can disable the coarsening in the file
fluid/constant/dynamicMeshDict.
Let me know how it goes.
Best,
David
Op vrijdag 23 september 2016 heeft Sergey [email protected] het
volgende geschreven:
David, I've compiled foam-extend-3.2 and FOAM-FSI on HP workstation. All
seams OK. I've tried to run 3dTube sample (it is close to my research
task), but unfortunately I've got an error after first 50 iterations on the
first temporal step. I've tried to check fsi library using testsuite-fsi -
no errors, all tests are passed. I've changed nothing in the 3dTube
tutorial. Settings were not modified.I've attached all the logs below.
foam-extend-make.txt
https://github.com/davidsblom/FOAM-FSI/files/490234/foam-extend-make.txt
fsi-foam-make.txt
https://github.com/davidsblom/FOAM-FSI/files/490235/fsi-foam-make.txt
log.blockMesh.txt
https://github.com/davidsblom/FOAM-FSI/files/490237/log.blockMesh.txt
log.checkMesh.txt
https://github.com/davidsblom/FOAM-FSI/files/490238/log.checkMesh.txt
log.decomposePar.txt
https://github.com/davidsblom/FOAM-FSI/files/490239/log.decomposePar.txt
log.fsiFoam.txt
https://github.com/davidsblom/FOAM-FSI/files/490236/log.fsiFoam.txt
log.renumberMesh.txt
https://github.com/davidsblom/FOAM-FSI/files/490240/log.renumberMesh.txt—
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SvensenSeven
commented on June 9, 2024
Yes, after disabling the coarsening it all works OK !!
Is it only my problem with coarsening or you have also problems when coarsening is enabled ?
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davidsblom
commented on June 9, 2024
There is a known problem with the old RBF mesh deformation solver. The new
ElRBFMeshotionSolver works just fine.
I guess there is a tutorial with that mesh motion solver.
Let me know if you have further questions.
Op vrijdag 23 september 2016 heeft Sergey [email protected] het
volgende geschreven:
Yes, after disabling the coarsening it all works OK !!
Is it only my problem with coarsening or you have also problems when
coarsening is enabled ?—
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SvensenSeven
commented on June 9, 2024
Using Paraview I've just mentioned that only fluid/internalMesh domain is deforming while playing time animation. The solid/internalMesh stays rigid. Is it correct ?
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davidsblom
commented on June 9, 2024
That's right. The mesh is fixed but you can show the displacement.
With warp vector button you can deform the solid mesh.
Op vrijdag 23 september 2016 heeft Sergey [email protected] het
volgende geschreven:
Using Paraview I've just mentioned that only fluid/internalMesh domain is
deforming while playing time animation. The solid/internalMesh stays rigid.
Is it correct ?—
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SvensenSeven
commented on June 9, 2024
Another short question. The outlet region seems to be rigid. Is it any way to make it deformable, like wall patch ? I'm worried about back-reflections from the rigid outlet...
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davidsblom
commented on June 9, 2024
sure, you'll have to change the boundary conditions for the solid in solid/0/U. The fluid mesh should also be allowed to move I guess. Right now, it is a fixed patch in fluid/constant/dynamicMesh, and should be a moving patch.
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SvensenSeven
commented on June 9, 2024
It seems that this issue can be closed
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davidsblom
commented on June 9, 2024
Thanks. I'll close it when I have fixed the elemental compilation script. Still have some problems with the continuous integration test suite.
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Related Issues (20)
- Add tutorial with SDC time integration
- Implementation of El::MaxAbs incorrect
- Add unit test for coarsening which verifies the number of selected points
- Problem compilation FOAM-FSI with Allwmake.firstInstall: unbound variable HOT 2
- FOAM-FSI. compilation. dependency list. cannot open files HOT 1
- RBFCoarsening: ensure unique points are selected HOT 1
- 3dTube. cannot restart computation from latestTime HOT 23
- precice: implement sub cycling
- deformable outlet crash. 3dTube based. preCICE. HOT 7
- preCICE. failed to restart HOT 3
- preCICE. failed to restart HOT 15
- Compiling on Ubuntu 16.04 HOT 1
- RBFMeshMotionSolver HOT 1
- Problem with gfortran library HOT 2
- No solid damping
- Problem with gfortran lib on Ubuntu 16.04 HOT 1
- FOAM-FSI does not work in Debug mode (index out of range) HOT 8
- Support for foam-extend-4.0 HOT 1
- precice
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