Comments (1)
Does the code run without errors when using the tutorial data?
Additionally, as a general approach, try simplifying the example code to help you (and me) figure out what is causing the error.
e.g. does the following work on your dataset, or throw the same error?
psq %>% tax_transform("compositional", rank = "Class") %>% comp_heatmap()
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Related Issues (20)
- let tax_select actually use a list for tax list HOT 1
- No change in #/Taxa when trying tax_select? HOT 5
- Output from taxatree_models not matching corncob::differentialTest()
- Subsetting aitchison distance
- mixed effect in dist_permanova
- Error: if (any(test_matrix < 1 & test_matrix != 0)) {: missing value where TRUE/FALSE needed HOT 1
- Example ordination plot workflow could be improved/simplified - currently shows 10% prevalence filtering of genera before CLR transform on families.. HOT 1
- Sample Names for Heatmaps HOT 1
- tax_transform add argument doesn't accept halfmin HOT 1
- tax_top can't actually "use counts" because it uses ps_get internally HOT 1
- tax_sort_ord should be able to sort taxa in a psExtra
- taxatree_plotkey emits dplyr dataframe warnings, originating from taxatree_plot_labelsQuadrant HOT 1
- dist_seriate
- Links broken in Readme.md on github.com only HOT 1
- shao19 example data family rank contains orders HOT 1
- example of tax_mutate for regex-based pre-cleaning of tax_table before tax_fix
- Interactive plot and it turns to black
- Tax fix with a minimum length of zero still removes/replaces empty strings
- Calculating gunifrac on the fly in ord_explore gives no indication that it is working
- tax_select using a list for input? HOT 2
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