Comments (1)
basic format, points to website
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Related Issues (20)
- let tax_select actually use a list for tax list HOT 1
- No change in #/Taxa when trying tax_select? HOT 5
- Output from taxatree_models not matching corncob::differentialTest()
- Subsetting aitchison distance
- mixed effect in dist_permanova
- Error: if (any(test_matrix < 1 & test_matrix != 0)) {: missing value where TRUE/FALSE needed HOT 1
- Example ordination plot workflow could be improved/simplified - currently shows 10% prevalence filtering of genera before CLR transform on families.. HOT 1
- Sample Names for Heatmaps HOT 1
- Support for TreeSummarizedExperiment? HOT 2
- error in taxatree_stats_p_adjust when using grouping = c("rank","term") HOT 1
- tax_sort_ord should be able to sort taxa in a psExtra
- taxatree_plotkey emits dplyr dataframe warnings, originating from taxatree_plot_labelsQuadrant HOT 1
- dist_seriate
- Links broken in Readme.md on github.com only HOT 1
- shao19 example data family rank contains orders HOT 1
- example of tax_mutate for regex-based pre-cleaning of tax_table before tax_fix
- Interactive plot and it turns to black
- Tax fix with a minimum length of zero still removes/replaces empty strings
- Calculating gunifrac on the fly in ord_explore gives no indication that it is working
- tax_select using a list for input? HOT 2
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