Comments (2)
Reporting is only via Pipestat now. This occurred with v0.13.0
: https://github.com/databio/pypiper/releases/tag/v0.13.0
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ok, then the docs are incorrect. pipestat is not the recommended way, it's the only way :)
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Related Issues (20)
- multi=False causes Errno 29 illegal seek during pytest teardown HOT 4
- unifying pipestat config with pipestat constructor HOT 2
- KeyError: 'Time' when using pipestat via pypiper HOT 6
- Critical bugs with reporting results HOT 3
- Logs are overwritten with new pipeline run HOT 6
- `logger_kwargs` isn't used in one branch of the pipeline manager setup HOT 4
- Pipeline log file could collide with filepath given to logmuse HOT 2
- `pipestat_project_name` parameter to manager constructor is currently unused HOT 3
- Running tests locally generates (or changes?) outputs that are not `.gitignore`d HOT 1
- Replace read_yaml_data with yacman.load_yaml HOT 1
- Idea: "describe" a pipeline
- Add `nofail` to `Stage`
- Add summary of `Stage`s of `Pipeline` which failed
- Rerun of downstream `Stage`s should be configurable, probably opt-in
- Setting the pipeline folder to a path that's not absolute causes problem for checkpointing HOT 1
- Pipeline "failure reason" loses some information
- Could `-N` / `--new-start` be given an alias, like `--clobber` or `--overwrite`?
- `Pipeline` doesn't respect `-N` / `--new-start`
- how to deal with huge fastq files HOT 1
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