Prosad Kumar Das's Projects
Personal implementation of algorithms in Algorithm Design and some other useful algorithms and data structures
Contains screenshots of all the slides of Andrew Brown's AWS Course
Bayesian Segmentation of Spatial Transcriptomics Data
Simulation of Belousov Zhabotinsky reaction with a CA(parallel implementation)
A simple and low cost particle detector for teaching
Training requirements for joining projects
Biological sequences for the julia language
Caltech Introduction to Programming for the Biological Science Bootcamp
GPU-accelerated multicellular modelling framework
A pipeline to detect chimeric transcripts derived from genes and transposable elements.
Implementation of Compression and Learning Algorithms
Course website "Docker and Singularity for reproducible research: getting started with containers"
Config files for my GitHub profile.
This repository contain files for my personal academic website
In-silico PCR, primer design and padlock design for in-situ sequencing
:cocktail: Web-based database system for flow cell management (incl. REST API)
Generate robust DNA barcode sets
A Python implementation of The Burrows-Wheeler Transform alongside Huffman coding on DNA sequences.
Docker container for Illumina bcl2fastq
Material for the ELIXIR Excelerate Deep Learning for Life Sciences workshop
Parse and process FASTA and FASTQ formatted files of biological sequences.
Code for design of diagnostic PCR primers, and metabarcoding markers.
Pipeline for designing custom probes against human genes
A modern genomics framework for julia
An overview of Go syntax and features.
Please download the latest version. "HIVSeqinR" is an R-based pipeline that processes HIV near-full-genome sequences and classifies genomes into "intact" or into various "defective" categories. Please see Wiki tab for more information.
Watch directories for the creation of illumina sequencer outputs. When detected, publish messages with details of the run to a TCP socket.
Analytics toolkit for Illumina sequencer metrics.