Name: Darlene Darlington Wagner
Type: User
Company: Eagle Global Scientific LLC
Bio: I work in Bioinformatics for the Division of Viral Diseases NGS Core Lab at the CDC National Center for Immunization and Respiratory Diseases.
Location: Atlanta, GA
Darlene Darlington Wagner's Projects
Scripts which perform web scraping, spreadsheet parsing, or both
A showcase of functions using Biopython, including FastqGeneralIterator, along with pandas and matplotlib for teaching Big Data parsing for NGS
Howdy
Pipelines written in Nextflow and Python to facilitate comparative genomics analysis for viruses. Requires Python 3.9.1 or above and Nextflow 21.04.3 and above.
NGS_Multi_Heal simplifies quality analysis, trimming, and healing of paired-end reads
Provides graphical and .json output for paired-end Next-Generation Sequencing (NGS) data as well as genome coverage data from .bed files. Requires Python 3.9.1 or higher.
Automates Illumina paired-end fastq NGS sequencing quality assurance.
python scripts for reading blastn output and manipulating text files for blast databases
A retrieval, annotation, curation tool for cofactor-dependent core metabolic proteins
Wrapper scripts for NCBI sratoolkit. Retrieves NGS data as Sequence Read Archive (SRA) from NCBI.
Facilitates post-processing of SNP pipeline outputs
Command-line perl scripts to automate routine, boring text editing tasks, such as formatting author's lists for EndNote