Name: Daniel Bullock
Type: User
Company: NSF
Bio: @AAAS STPF fellow at @nsf-open, Office of Advanced Cyberinfrastructure (OAC) | Mostly python, long variable names, & more comments than code.
Twitter: Is_Dan_Bull
Location: Alexandria, VA
Blog: https://dannbullock.github.io/
Daniel Bullock's Projects
Directory of Neurohackademy 2019 projects
The website for the workshop "An Open Source Model for Data/Metadata Standards", April 8-9, 2024
An anatomically defined, subject specific tractography segmention of connections to the human anterior cingulate cortex via dockerized processing steps.
This will give you the fiber count, mean length, standard deviation of length, total length, and volume of each fiber tract classified by AFQ or WMA.
Remove islands (unconnected components) from and/or inflate a given volumetric parcellation.
Generate a structural connectivity matrix and a White Matter Classification structure for a given parcellation and tractogram.
Brainlife wrapper app for Dipy workflows.
app to generate binary masks of the segmented fiber tracts
brainlife wrapper for HCP Pipelines
Generates multiple graphs that can be used as a quality check for the outputs of AFQ and LiFE. This application will only work if the zero weighted fibers are removed AFTER AFQ.
Runs mrtrix3 ACT (Anatomically Constrained Tractography) using either single- or multi-shell diffusion-weighted MRI data.
Preprocessing of diffusion MRI data.
Simple converter for the multi-tck format, tcks, which combines these into a single tck file and produces an associated WMC file.
This is a template for a python-based brainlife.io/app
Containerized app for tracking the anterior limb of the internal capsule (in humans)
Classify major human white matter tracts
This app computes the mean and standard deviation of Voxeleron OTC data for each degree of visual angle. This can be computed within a single layer, or across layers. The output of this app is a table for both mean and standard deviation, and the output data (visual angle OCT data) for each combination of eye and layer combination.
A generic template app for warping a provided ROI (situated in a reference space) to a given subject space.
An app for generating multiple different kinds of figures from an input set of tracts (e.g as represented by a WMC object)
Classifies streamlines into known anatomical tracts.
Tools for working with brain atlas labels
2021 Bloomington hackathon working repo for prototype WM atlas tract segmentation method