Comments (5)
DaliangNing
commented on June 28, 2024
I need to test your dataset to figure out the reason. You may send me ([email protected]) the input files and your R code : )
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DaliangNing
commented on June 28, 2024
Has your problem been solved?
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WeichuanLin6688
commented on June 28, 2024
Yeah！I have solved this problem！Thank your for that！
林维钏weichuanlin
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…------------------ Original ------------------
From: Daliang Ning ***@***.***>
Date: Fri,Jun 3,2022 11:08 PM
To: DaliangNing/iCAMP1 ***@***.***>
Cc: WeichuanLin6688 ***@***.***>, Author ***@***.***>
Subject: Re: [DaliangNing/iCAMP1] unsolved problem (Issue #23)
Has your problem been solved?
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WeichuanLin6688
commented on June 28, 2024
Dear Ning
By the way，may I ask your a question about bacterial network construction？
which the methods could be used if a bacterial community is dominated by stochastic processes （my data nst >70%）.Please do not hesitate to give advise.
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发件人: "DaliangNing/iCAMP1" ***@***.***>;
发送时间: 2022年6月3日(星期五) 晚上11:11
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主题: Re: [DaliangNing/iCAMP1] unsolved problem (Issue #23)
Closed #23 as completed.
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DaliangNing
commented on June 28, 2024
How to integrate the stochasticity results into network analysis is still under development. Currently, you may still use any network methods to explore the associations among taxa, which generally does not conflict with the stochasticity results. Species controlled by stochastic processes (e.g., neutral dispersal) can show strong associations if they travel together due to a strong flood or thrive together due to general resources increase.
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Related Issues (20)
- Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent HOT 11
- Error in com.bin[[i]]: attempt to select less than one element in integerOneIndex HOT 8
- Potentially incorrect column names in icamp.cate HOT 2
- ITS data? HOT 4
- Error in CreateFileBackedBigMatrix(as.character(backingfile), as.character(backingpath), : Problem creating filebacked matrix. HOT 2
- abundance weighted bMNTD & bNTI HOT 2
- OpenBLAS blas_thread_init: pthread_create failed for thread in betaMPD calculation HOT 4
- core, rare and other taxa HOT 2
- Error occured while runwhile bNRI.bin.big HOT 5
- Mismatch in values between vegdist Bray distances and RC.pc CB.obs HOT 2
- Some questions about OTUs in each group HOT 2
- Out of memory? HOT 7
- Error in oldname[j, 1:2] : subscript out of bounds HOT 5
- an issue in bNTI.big.r HOT 1
- Error in checkForRemoteErrors(val) : 2 nodes produced errors; first error: subscript out of bounds HOT 5
- Results of bin.size.limit parameters to12 and 72 were same HOT 12
- Error in h(simpleError(msg, call)) : when running icamp.big HOT 2
- Solution to large dataset? HOT 3
- Error while computing bNRI for strict bins HOT 3
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