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cwhelan's Projects

cloudbreak icon cloudbreak

The Cloudbreak Hadoop-based Genomic Structural Variation Caller

htsjdk icon htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

jclouds icon jclouds

jclouds is an open source library that helps you get started in the cloud and reuse your java development skills. Our api allows you to freedom to use portable abstractions or cloud-specific features. We support many clouds including Amazon, VMWare, Azure, and Rackspace.

mocha icon mocha

MOsaic CHromosomal Alterations (MoChA) caller

quartetibdanalysis icon quartetibdanalysis

Tools for analyzing IBD state and copy number variation in quartet sequencing experiments

shapeit4 icon shapeit4

Segmented HAPlotype Estimation and Imputation Tool

sv-annotate icon sv-annotate

A small pipeline to annotate and filter candidate structural variation calls

svfactorie icon svfactorie

Detect genomic structural variations using conditional random fields in the Factorie framework

tag-public icon tag-public

Official workflows published by the Broad Institute's Genomics Platform Translation Analysis Group (TAG)

warp icon warp

WDL Analysis Research Pipelines

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