Hello! My name is Mat. As the title states, I'm unable to get Morphe

Error when searching mzML converted from mzXML. about morpheus HOT 5 CLOSED

gutierrezm00 commented on August 27, 2024

Error when searching mzML converted from mzXML.

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Comments (5)

cwenger commented on August 27, 2024

Hi Mat,

Thanks for your extensive bug report!

This error was due to the activation energy being listed before the activation type in the mzML, e.g.:

              <activation>
                <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="35.0" unitCvRef="UO" unitAccession="UO:0000266" unitName="electronvolt"/>
                <cvParam cvRef="MS" accession="MS:1000133" name="collision-induced dissociation" value=""/>
              </activation>

instead of what I had always seen before:

              <activation>
                <cvParam cvRef="MS" accession="MS:1000133" name="collision-induced dissociation" value=""/>
                <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="35.0" unitCvRef="UO" unitAccession="UO:0000266" unitName="electronvolt"/>
              </activation>

I just pushed a fix for this. Do you build from source or do you need an updated release?

-Craig

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gutierrezm00 commented on August 27, 2024

an updated release would be most helpful for me!

(Very impressive response time by the way)

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cwenger commented on August 27, 2024

I haven't done a release in many years but I'll see if I can refresh my memory!

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cwenger commented on August 27, 2024

New release is up.