Comments (11)
Sorry, I thought I had replied to this sooner. I need the code you used and all the data that would allow me to reproduce this error.
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I still have not received any code. I cannot debug your issue without it.
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Please do not use code from older versions, as v3.0.0
is not backwards compatible. I have a few other comments:
- In your
03_makeGraphs.R
script, change the argumentgroups
togrpNames
. - You set
weighting='sld'
but your modality isfmri
; this does not fit assld
is specific to DTI (streamline density). - I do not understand why you load so many packages in your initial script. I presume you use them for some purposes in another script, but it might not be necessary. It could introduce issues with function names conflicting across packages.
Otherwise, I did not get any errors. Please make sure you read through the current User Guide. Specifically Chapter 7.3; there is a code block that you can try and it should work for you.
If you are new to R programming/scripting, I recommend taking some kind of introductory (short) course or following some tutorials (which can be found online), or if you have the time to read an introductory book (there should be some free e-books out there somewhere).
I will close the issue for now, but please try my suggestions and if there continues to be a problem let me know. You may want to join the Google Group, as I think it is more appropriate for small errors such as this. But if you feel it is necessary, you may reopen the issue.
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I assume you are referring to the error you see when you simply type g
. That error is specific to igraph
, and it is not a critical error, so you would have to contact the igraph
developers to solve it. However, it should not affect data analysis.
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from braingraph.
You are doing it backwards; subnet
should include the names of the regions you want to keep. Please read the documentation carefully.
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Related Issues (20)
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