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assembly_rnaseq_without_refgenome

this pipe composed by several perl scripts was mainly used to assembly RNA_seq

augustus

Genome annotation with AUGUSTUS

awesome-bioinformatics-tools

A curated list of awesome Bioinformatics software, tools and resources

bamtools

C++ API & command-line toolkit for working with BAM data

biopyfig

bioinformation python figure

bootstrap

The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.

cactus

Official home of genome aligner based upon notion of Cactus graphs

comparative-annotation-toolkit

deschrambler

dfoil

DFOIL: Introgression Testing for Five Taxa

discover_pseudogenes

Discover pseudogenes in a newly assembled genome, using reference gene/protein sequences.

evagan

The repository is dedicated to Evasion Generative Adversarial Network source code.

evidencemodeler

source code for EVM

extract-seq-from-big_genome

extract dna seq from big-genomes based blast results with your query sequences

extract_longest_mrna

since the annotated gene always possesses more than one copy of mRNA, and we need to use a sequence of CDS to represent its gene sequce, so we need to extract the longest mRNA or CDS to perform the following analysis. here the script is suitble for extracting the sequence

gaas

Genome Assembly and Annotation Service code

genomesyn

We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a necessary complement to the study of genomic synteny and structural variation and its visualization tools.

genomethreader

GenomeThreader gene prediction software.

geta

guideline-for-computational-biology-and-bioinformatics

jstacs

libjson-rpc-cpp

C++ framework for json-rpc (json remote procedure call)

my_script

The scripts wrote by my self

ngenomesyn

Any Way to Show Multi genomic Synteny

orfipy

Fast and flexible ORF finder

papaver-genomics

The genomic data for Papaver species

pasapipeline

PASA software

perl1line.txt

collection of handy perl one-liner scripts

protparcon

An application framework for manipulating molecular data and identifying parallel and convergent amino acid replacements at the molecular level.

pseudogenepipeline