Comments (3)
jcohenadad
commented on August 16, 2024
not a big fan:
- spinal level is difficult to find (or maybe you meant "vertebral" level?)
- prone to error from MR tech
- automated tools can find the level
i would just indicate that the acquisition is spinal (e.g. with suffix loc-spine), in case of dual brain-spine session
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pbellec
commented on August 16, 2024
Sounds good @jcohenadad
@bpinsard can you confirm that spinal cord images include a cspine tag in the datalad?
It seems to be the case https://github.com/courtois-neuromod/anat/tree/0e06985d48eebfd62b231c5fee4640143e92d29b/sub-01/ses-001/anat
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bpinsard
commented on August 16, 2024
Yes, I have to add a bp-cspine tag to differentiate from the brain images with the same contrast.
This tag is not yet BIDS-valid, it is in a BIDS extension (MIDS).
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Related Issues (20)
- add motion and snr stats
- switch to jupyter book?
- mention informed consent in subjects' description HOT 1
- add dataset contributors for acknowledgements HOT 1
- specify the number of anatomical images in the preprocessing HOT 1
- check if the versions of fmriprep are still correct
- check the number of BOLD runs in the preprocessing docs
- specify we had to adapt the boilerplate information for the preprocessing docs
- add copyright waiver on the documentation, similar to fmriprep
- Push pdf release of the docs on zenodo HOT 1
- create 2022-alpha tag on the doc
- create a summary paragraph of the preprocessing
- improve description of fMRI sequences HOT 2
- describe the hearing safety assesment protocol HOT 2
- fix contradiction shinobi_training and shinobi
- anat sessions
- hcptrt: additional info
- specify that subjects completed shinobi_training before entering shinobi.
- create a publication gallery
- add stats on dataset size
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