Comments (1)
Bad frames are now identified as having low correlations with the target frame, and standing as outliers compared to neighboring ~30 frames. These frames are not used for cell detection, and are replaced by the values of the next valid frame, when computing cell traces in the signal extraction step.
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Related Issues (20)
- running suite2p with GUI on GPUs HOT 1
- using "look_one_level_down" doesn't use "bad_frames.npy"
- Input to Suite2P
- Merging ROIs in suite2P matlab version HOT 1
- Interpreting Deconvolution Results HOT 4
- Enquiry regarding diameter of ROI HOT 1
- Cannot set up batch processing
- saving registered uint16 data
- GUI error
- deconvolution_standalone2 not standalone
- tau value for GCaMP8 HOT 2
- combine sbx files HOT 1
- contiguous scanning ROIs HOT 1
- multiplane_parallel in an HPC (Slum) HOT 1
- Transposing F matrix in spike deconvolution
- Optimal tau value for GCaMP8m HOT 1
- Save motion corrected tiffs
- Suite2p on mac
- Neuropil fluorescence calculation
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