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cordeiroemg's Projects

gbs_radseq_workflow icon gbs_radseq_workflow

Downstream analysis in R. The workflow includes enviroment setting up, data quality check, descriptive genetic estimates, cluster analyis.

myzus_popgen_workflow icon myzus_popgen_workflow

The aphid Myzus persicae is a destructive agricultural pest that displays an exceptional ability to develop resistance to both natural and synthetic insecticides. To investigate the evolution of resistance in this species we generated a chromosome-scale genome assembly and living panel of >110 fully sequenced globally sampled clonal lines. Our analyses reveal a remarkable diversity of resistance mutations segregating in global populations of M. persicae. We show that the emergence and spread of these mechanisms are influenced by host-plant associations, uncovering the widespread co‐option of a host-plant adaptation that also offers resistance against synthetic insecticides. We identify both the repeated evolution of independent resistance mutations at the same locus, and multiple instances of the evolution of novel resistance mechanisms against key insecticides. Our findings provide fundamental insights into the genomic responses of global insect populations to strong selective forces, and hold practical relevance for the control of pests and parasites.

r_notebooks icon r_notebooks

Jupyter-notebooks containing notes and codes of examples from books and tutorials.

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