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Comments (5)

shristi-shrestha avatar shristi-shrestha commented on September 5, 2024

I have the same problem. Did you figure out the fix?

from soupx.

MQMQ2018 avatar MQMQ2018 commented on September 5, 2024

from soupx.

JonathanCruard avatar JonathanCruard commented on September 5, 2024

Hi, I have that problem too, got some clues to resolve this?
Thanks,
JC

from soupx.

constantAmateur avatar constantAmateur commented on September 5, 2024

This error usually indicates a duplicate or NA row or column name in the sparse matrix. If you have checked your data and are confident this is not the case, please send me an example file and I will investigate further.

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JonathanCruard avatar JonathanCruard commented on September 5, 2024

Just saw that you fixed the problem of loading aggregated datasets from cellranger.
By the way thank you for that!
But I noticed that it keep the aggregated samples in the same soup channel. Wouldn't it be better if those aggregated samples were splited into different channels?
Best,
JonathanCruard

from soupx.

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