Comments (2)
Changing argument in facet_wrap
solved the issue raised above but generated a new one:
# Create plot
p = ggplot(Data, aes(x = Data[[X]], y = Data[[Y]], fill=Data[[X]])) +
geom_violin() +
geom_boxplot(width = 0.15, fill = "grey", na.rm=T, outlier.shape = NA) +
geom_jitter(size = 3, width = 0.15, height = 0, alpha = 0.5) +
labs(x = X, y = Y, title=Title,
caption = "[+]p<.1; [*]p<.05; [**]p<.01; [***]p<.001") +
theme_bw() +
ylim(min(Data[[Y]], na.rm=T),max(Data[[Y]], na.rm=T)+YLimSupp)
# Facetting the plot if required
if (dim(Stats)[1]>1){p = p + facet_wrap(.~Measurement, scales="free_y")} # FIXED HERE
# Add the significance bars
# https://cran.r-project.org/web/packages/ggsignif/vignettes/intro.html
Steps = 0.04
NAIdx = !is.na(Annot)
Annot = Annot[NAIdx]
Groups = unique(Data[[Z]])[NAIdx]
AnnotationDF = data.frame(color = Groups,
start = rep(Levels[1], sum(NAIdx)),
end = rep(Levels[2], sum(NAIdx)),
y = rep(max(Data[[Y]], na.rm=T)+Steps*max(Data[[Y]], na.rm=T),sum(NAIdx)),
label = Annot)
p = p + geom_signif(data = AnnotationDF,
aes(xmin = AnnotationDF$start, xmax = AnnotationDF$end, annotations = AnnotationDF$label, y_position = AnnotationDF$y),
vjust = 0.3, tip_length = 0, size = 1.5, textsize = 10, manual=T)
plot(p)
Does this mean that AnnotationDF
needs to include 6 rows to match the number of violin plots ?
Best,
Corentin
from ggsignif.
Anyone ?
from ggsignif.
Related Issues (20)
- Manual vertical brackets do not work: "arguments imply differing number of rows" HOT 1
- Warning message: Ignoring unknown aesthetics: xmin, xmax, annotations, y_position HOT 3
- adding scale_y_log10 changes y-axis to a weird range
- geom_signif does not plot comparison on the facetted plot with free x scale HOT 2
- Where can we find the significance level in the ggplot object slots? HOT 1
- Rename default branch from `master` to `main` HOT 3
- CRAN release 0.6.4 HOT 3
- Correcting for multiple testing when using geom_signif HOT 5
- Feature request - add more distance between comparisons and data HOT 4
- geom_signif - all comparisons dissappear when one comparison has missings HOT 2
- Significance stars are misaligned when using "NS" as well
- ggsignif results don't match with anova significance HOT 1
- Use cross symbol when p <.10?
- what are * , ** , *** correspond if specific values by user is not given? HOT 1
- How do I hide the no significant (NS) comparisons?
- Adding significance bar on coupled boxplots
- FDR warning HOT 1
- Show exact p value in comparisons HOT 3
- ggsignif facetting issue - Missing significance labels in certain facets
- Label missing if identical
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from ggsignif.