Comments (4)
jaimergp
commented on June 3, 2024
As a workaround, can you use grayskull instead of conda skeleton?
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Mathias-Boulanger
commented on June 3, 2024
Yes, I tried grayskull and I succeeded to create the recipe (and went through local test) for one of the dependency
of the pod5 package called: vbz-h5py-plugin.
But the recipe for the pod5 package failed upon testing mainly due to a dependency called lib-pod5 that is not available on conda-forge.
When I try to use grayskull to create lib-pod5 that is available on PyPi I got this error:
(condaforge) [boulange@seneca recipes]$ grayskull pypi lib-pod5
#### Initializing recipe for lib-pod5 (pypi) ####
Recovering metadata from pypi...
Traceback (most recent call last):
File "/g/krebs/boulanger/miniconda3/envs/condaforge/bin/grayskull", line 10, in <module>
sys.exit(main())
^^^^^^
File "/g/krebs/boulanger/miniconda3/envs/condaforge/lib/python3.12/site-packages/grayskull/main.py", line 277, in main
generate_recipes_from_list(args.pypi_packages, args)
File "/g/krebs/boulanger/miniconda3/envs/condaforge/lib/python3.12/site-packages/grayskull/main.py", line 300, in generate_recipes_from_list
recipe, config = create_python_recipe(
^^^^^^^^^^^^^^^^^^^^^
File "/g/krebs/boulanger/miniconda3/envs/condaforge/lib/python3.12/site-packages/grayskull/main.py", line 335, in create_python_recipe
GrayskullFactory.create_recipe(
File "/g/krebs/boulanger/miniconda3/envs/condaforge/lib/python3.12/site-packages/grayskull/base/factory.py", line 46, in create_recipe
GrayskullFactory.REGISTERED_STRATEGY[repo_type.lower()].fetch_data(
File "/g/krebs/boulanger/miniconda3/envs/condaforge/lib/python3.12/site-packages/grayskull/strategy/pypi.py", line 62, in fetch_data
update_recipe(recipe, config, sections or ALL_SECTIONS)
File "/g/krebs/boulanger/miniconda3/envs/condaforge/lib/python3.12/site-packages/grayskull/strategy/pypi.py", line 499, in update_recipe
metadata = get_metadata(recipe, config)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/g/krebs/boulanger/miniconda3/envs/condaforge/lib/python3.12/site-packages/grayskull/strategy/pypi.py", line 350, in get_metadata
sdist_metadata, pypi_metadata = get_origin_wise_metadata(config)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/g/krebs/boulanger/miniconda3/envs/condaforge/lib/python3.12/site-packages/grayskull/strategy/pypi.py", line 234, in get_origin_wise_metadata
pypi_metadata = get_pypi_metadata(config)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "/g/krebs/boulanger/miniconda3/envs/condaforge/lib/python3.12/site-packages/grayskull/strategy/pypi.py", line 277, in get_pypi_metadata
raise AttributeError(f"There is no sdist package on pypi for {config.name}.")
AttributeError: There is no sdist package on pypi for lib-pod5.
Thank you for your idea!
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jaimergp
commented on June 3, 2024
You can try to use the GH repo for lib-pod5 as a the source. That said, it looks like a C++ heavy package so it won't be one of those trivial packaging tasks :P
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Mathias-Boulanger
commented on June 3, 2024
Indeed, my first experience trying make conda package is not smooth as I though it would be...
The pod5 project is also located on GH here
Do you think I will have more chance to create recipe from this URL?
Thank you the suggestion.
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