Comments (1)
I found out what the reason is. At first, I used the fs::dir_ls() function to specify the raw data, but the path information was missing from the returned result. After adding the full path information, it can run smoothly.
raw_file = fs::dir_ls("raw_data", recurse = T, glob = "*.mzML") #uese for readMSData()
mzMLpths = str_c(getwd(), "/", raw_file) #used for purityA()
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Related Issues (20)
- msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available HOT 7
- Error in `dimnames<-.data.frame` when using "flag_remove" function
- assessPuritySingle for MSMS from QTOF
- Precursor ion purity calculations for mzXML and other file formats
- combineAnnotation function too slow HOT 1
- createDatabase low memory version
- fillChromPeaks and NA values HOT 7
- Any suggestion to summarize xcmsMatchedResults? HOT 6
- createDatabase function HOT 13
- msPurity spectralMatching empty for negative mode HOT 3
- Convert compound name to database ID HOT 4
- Correction for the reverse dot product cosine (rpdc) in the spectralMatching module HOT 4
- Correction for the align function in the spectralMatching.R HOT 2
- Any plan to implement HAMMER's probability score and matching distance score into the spectral matching module?
- Update bio.tools entry
- Processing Agilent QToF files HOT 3
- Installing the msPurity package in R studio HOT 8
- unused argument (xcmsObj = xcmsObj) HOT 2
- createMSP the precursor mz and retention time stored in the MSP file - should be the median
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