Comments (1)
Hi Elif, and thank you for interest in CAMSA
!
The reason CAMSA
complains here is because in the --points
file the assembly points constitute an assembly that has a branching (at the Scaffold_27t
extremity apparently). Only totally linear (i.e., non-branching assemblies can be translated into fasta
).
CAMSA
shall not produce branching assemblies, so that is weird.
I wonder two things:
- does the
M34_camsa_points
file contain a collection of assembly points (i.e., assembly) that was produced byrun_camsa.py
tool? - if so, can you share the
M34_camsa_points
file with me, so I check where the issue is, and how has it happened?
from camsa.
Related Issues (20)
- FASTA utils instructions
- Converter from assembly points to DOT decribing SAG
- CAMSA input file cleaner
- CAMSA overall description
- Pyp
- PyPI distribution
- Reference input
- Assembly points classification in reference mode
- Assembly points to FASTA translation
- Error building from source from pypi HOT 2
- Error computing assembly points conflicts with run_camsa.py HOT 6
- Can CAMSA use multithread or MPI ? HOT 3
- fasta2camsa_points - ERROR HOT 20
- Error run_camsa.py HOT 9
- converting points to fasta
- CAMSA - Can't we run in parallel mode HOT 1
- error in installing camsa HOT 2
- the fasta2camsa_points error
- .tbl file for NCBI submission
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from camsa.