Comments (1)
aganezov
commented on August 23, 2024
Hi Elif, and thank you for interest in CAMSA!
The reason CAMSA complains here is because in the --points file the assembly points constitute an assembly that has a branching (at the Scaffold_27t extremity apparently). Only totally linear (i.e., non-branching assemblies can be translated into fasta).
CAMSA shall not produce branching assemblies, so that is weird.
I wonder two things:
- does the
M34_camsa_pointsfile contain a collection of assembly points (i.e., assembly) that was produced byrun_camsa.pytool? - if so, can you share the
M34_camsa_pointsfile with me, so I check where the issue is, and how has it happened?
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Related Issues (20)
- FASTA utils instructions
- Converter from assembly points to DOT decribing SAG
- CAMSA input file cleaner
- CAMSA overall description
- Pyp
- PyPI distribution
- Reference input
- Assembly points classification in reference mode
- Assembly points to FASTA translation
- Error building from source from pypi HOT 2
- Error computing assembly points conflicts with run_camsa.py HOT 6
- Can CAMSA use multithread or MPI ? HOT 3
- fasta2camsa_points - ERROR HOT 20
- Error run_camsa.py HOT 9
- converting points to fasta
- CAMSA - Can't we run in parallel mode HOT 1
- error in installing camsa HOT 2
- the fasta2camsa_points error
- .tbl file for NCBI submission
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