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afwf-workflows

alevin-fry

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

alevin-fry-paper-scripts

alevin-paper-pipeline

A simple pipeline using CGAT framework for benchmarking and analysis.

alevin-tutorial

This is a support website for Alevin-tool (part of Salmon).

bbhash

Bloom-filter based minimal perfect hash function library

bioconda-recipes

Conda recipes for the bioconda channel.

bitseqvb_benchmarking

BitSeqVB paper benchmarking experiments

bp_2021-lfl

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

color-mst

combine-lab.github.io

combine-lab.github.io-old

Lab website

combinelib

Assortment of random, potentially-useful utility functions and classes.

compact_vector

Bit packed vector of integral values

continuous_analysis

Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.

continuous_analysis_rnaseq

Example of how continuous analysis can be used for RNA-Seq differential expression.

cosmo

Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.

cqf-rust

An attempt at rustification of the CQF (https://github.com/splatlab/cqf)

cse549-txpcoverage

cuttlefish

Building the compacted de Bruijn graph efficiently from references or reads.

cuttlefish_experiments

easyhdf5

eds

:bulb: :floppy_disk: :minidisc: A simple, intuitive and Efficient single cell binary Data Storage format

efgdl-spec

Specification for the extended fragment geometry description language

empirical_splice_status

extended-single-cell-best-practices

This project is work in progress! Please be patient.

fastadigest

Get the "signature" of fasta files

forseti

forseti-experiments